Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d11
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.4  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 523 ADLKLNNENNYDIGGAYRKDKPEFWFYYT 609
           A  +LNN   + IGG +  +K + +F  T
Sbjct: 24  ASPQLNNPTLFMIGGVFSNNKSKKYFEQT 52


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 443 KISQRMLTYLLCSDVNLRKPHTFALWMRTLNLTMKI 550
           + S R L+Y+L S + L    TFAL +R  ++   I
Sbjct: 688 RASGRELSYVLLSGILLCYLVTFALVLRPTDIVCGI 723


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 60  MGINYVHTYVPTQII 16
           +G +  HTY+P+ +I
Sbjct: 213 LGYHLFHTYIPSALI 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,762
Number of Sequences: 438
Number of extensions: 3306
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)