Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d10
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    32   0.30 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    31   0.92 
Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   8.6  
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    27   8.6  
AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical ...    27   8.6  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 467 PPGACDPPKMQCPNTPAPAPDKDCPLRP 550
           PP  C PP M CP  P P P   CP  P
Sbjct: 52  PPQFCPPPPM-CPPPPPPPPPPMCPPPP 78



 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 467 PPGACDPPKMQCPNTPAPAPDKDCPLRP 550
           PP  C PP + CP  P   P + CP  P
Sbjct: 34  PPPMCAPPPLPCPPPPI-CPPQFCPPPP 60


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
 Frame = +2

Query: 467 PPGACDPPK---MQCPNTPAPAPDKDCP 541
           PP  C PP    M CP  P P P   CP
Sbjct: 67  PPPICPPPPPPPMPCPPPPPPMPRPSCP 94


>Z83227-3|CAB05726.2|  241|Caenorhabditis elegans Hypothetical
           protein F45B8.3 protein.
          Length = 241

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 437 PEKTLTTIVRP-PGACDPPKMQCPNTPAPAP 526
           P   + +  RP P  C  P M+CPN   PAP
Sbjct: 180 PAPCVCSAPRPVPCRCGAPPMECPNCDMPAP 210


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 488  PKMQCPNTPAPAPDKDCPLRPCD 556
            PK +C   P P   + C L PCD
Sbjct: 1859 PKEKCELFPKPNESQTCELNPCD 1881


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 488  PKMQCPNTPAPAPDKDCPLRPCD 556
            PK +C   P P   + C L PCD
Sbjct: 1859 PKEKCELFPKPNESQTCELNPCD 1881


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 83  LPRNSVSCNIVHSNRQQKRQTSKMIVKSP 169
           L +  V+CN+V +N    R+TSK+  + P
Sbjct: 482 LIKTEVTCNLVSTNGNNFRRTSKLCFEKP 510


>AC024845-7|AAF60849.2|  422|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.1 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -2

Query: 492 FGGSQAPGGLTIVVSVFSGLNIPYEYATPNVPDNNKATSFVC 367
           F  + + GGL   + +   + IP  Y+ P +PD  +    +C
Sbjct: 137 FSSNNSSGGLFSSILILISIIIPSVYSEPKLPDCEQIPKVLC 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,754,744
Number of Sequences: 27780
Number of extensions: 339101
Number of successful extensions: 1075
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)