Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d09
         (560 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D572B6 Cluster: PREDICTED: similar to CG4938-PA;...    46   5e-04
UniRef50_Q178N0 Cluster: Putative uncharacterized protein; n=1; ...    44   0.003
UniRef50_O45887 Cluster: Seryl trna synthetase protein 1; n=2; C...    38   0.12 
UniRef50_A7GL53 Cluster: Methyl-accepting chemotaxis sensory tra...    37   0.28 
UniRef50_A0BX62 Cluster: Chromosome undetermined scaffold_133, w...    33   3.4  
UniRef50_Q1K3R3 Cluster: NADH-quinone oxidoreductase; n=1; Desul...    33   4.6  
UniRef50_Q18XQ3 Cluster: Histidine kinase precursor; n=2; Desulf...    33   4.6  
UniRef50_A6PR12 Cluster: Putative uncharacterized protein precur...    32   8.0  

>UniRef50_UPI0000D572B6 Cluster: PREDICTED: similar to CG4938-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG4938-PA - Tribolium castaneum
          Length = 422

 Score = 46.4 bits (105), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +2

Query: 362 EIKQNIKIRKGVGDIDRVMQLYKIIXKTSEDNHEYERIKQDLYEALSILPNKTHPFVEGK 541
           EI +NI  RKG+G+I+RV  L K + +   ++  Y   K +    +  +PN+THP V G 
Sbjct: 44  EISKNITNRKGIGNIERVHVLKKQLQELDPNDKLYNATKSEFETEVLRIPNRTHPQVAGY 103

Query: 542 FEPP 553
            + P
Sbjct: 104 GDSP 107


>UniRef50_Q178N0 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 190

 Score = 43.6 bits (98), Expect = 0.003
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +2

Query: 362 EIKQNIKIRKGVGDIDRVMQLYKIIXKTS-EDNHEYERIKQDLYEALSILPNKTHPFV 532
           +I+ N++ RKG+G+I  V +L K I     E++    R+   L E L  +PNKTHP V
Sbjct: 72  QIQANVEHRKGIGNIQLVHELNKQIKSLPVEESVNRNRLNDQLQEELGKIPNKTHPDV 129


>UniRef50_O45887 Cluster: Seryl trna synthetase protein 1; n=2;
           Caenorhabditis|Rep: Seryl trna synthetase protein 1 -
           Caenorhabditis elegans
          Length = 441

 Score = 38.3 bits (85), Expect = 0.12
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
 Frame = +2

Query: 359 EEIKQNIKIRKGVGDIDRVMQLYKIIXKTSE----------DNHEYERIKQDLYEALSIL 508
           E I++NI  RKGVGDID+V + + +I K  +             +Y+++  +LY+   ++
Sbjct: 57  EAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKYKQLWDELYDEAILI 116

Query: 509 PNKT 520
           PN T
Sbjct: 117 PNMT 120


>UniRef50_A7GL53 Cluster: Methyl-accepting chemotaxis sensory
           transducer; n=1; Bacillus cereus subsp. cytotoxis NVH
           391-98|Rep: Methyl-accepting chemotaxis sensory
           transducer - Bacillus cereus subsp. cytotoxis NVH 391-98
          Length = 573

 Score = 37.1 bits (82), Expect = 0.28
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 368 KQNIKIRKGVGDIDRVMQLYKIIXKTSEDNHEYERIKQDL 487
           K N K++K + D +++M+LY+   KTS++   YE  K DL
Sbjct: 84  KLNEKLQKNIQDNEKMMKLYEQTKKTSDEQKVYEAFKSDL 123


>UniRef50_A0BX62 Cluster: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_133,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1128

 Score = 33.5 bits (73), Expect = 3.4
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 365 IKQNIKIRKGVGDIDRVMQLYKIIXKTSEDNHEYERIKQDLY 490
           IK   K ++   D ++++QL KII     D +E++ I+QDL+
Sbjct: 867 IKSKWKFKENKFDQEQLIQLTKIIYLQENDEYEFQTIQQDLF 908


>UniRef50_Q1K3R3 Cluster: NADH-quinone oxidoreductase; n=1;
           Desulfuromonas acetoxidans DSM 684|Rep: NADH-quinone
           oxidoreductase - Desulfuromonas acetoxidans DSM 684
          Length = 171

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
 Frame = -1

Query: 551 EVQTFLLQ--KDGFYLVRYLALHINPAL 474
           +++ F +Q  KDGFYLV  +A+H+NPA+
Sbjct: 37  KLRDFAMQMLKDGFYLVDLMAVHVNPAV 64


>UniRef50_Q18XQ3 Cluster: Histidine kinase precursor; n=2;
           Desulfitobacterium hafniense|Rep: Histidine kinase
           precursor - Desulfitobacterium hafniense (strain DCB-2)
          Length = 536

 Score = 33.1 bits (72), Expect = 4.6
 Identities = 17/45 (37%), Positives = 27/45 (60%)
 Frame = +2

Query: 176 SFKLSLFKSLDW*YFTSVKMLYISSLIQNYRIVYSTKGFKRFFXQ 310
           +FKL +  SL + +FTS+ ML  +  I+N+ +   TK F+  F Q
Sbjct: 9   TFKLFIITSLFFIFFTSLTMLLQTVFIENFYLSKKTKDFEANFQQ 53


>UniRef50_A6PR12 Cluster: Putative uncharacterized protein precursor;
            n=1; Victivallis vadensis ATCC BAA-548|Rep: Putative
            uncharacterized protein precursor - Victivallis vadensis
            ATCC BAA-548
          Length = 1245

 Score = 32.3 bits (70), Expect = 8.0
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 374  NIKIRKGVGDIDRVMQLYKIIXKTSEDNHEYERIKQD---LYEALSILPNKTHPFVEGKF 544
            N+++   + D+D++++L++ I   ++  HE E  K +     EA S+   KT   V  K 
Sbjct: 862  NLQLHSSLIDLDKLIELFQPIAAAAQARHEAENKKNEAAATAEAESVKKEKTAVPVVEKA 921

Query: 545  EPPIV 559
             PP++
Sbjct: 922  PPPVL 926


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 415,857,051
Number of Sequences: 1657284
Number of extensions: 6598413
Number of successful extensions: 15851
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15849
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37488397230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)