Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d09
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna synt...    38   0.004
AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA sy...    38   0.004
U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm recept...    29   2.3  
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine re...    27   9.2  

>U58753-9|AAC24441.2|  441|Caenorhabditis elegans Seryl trna
           synthetase protein 1 protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
 Frame = +2

Query: 359 EEIKQNIKIRKGVGDIDRVMQLYKIIXKTSE----------DNHEYERIKQDLYEALSIL 508
           E I++NI  RKGVGDID+V + + +I K  +             +Y+++  +LY+   ++
Sbjct: 57  EAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKYKQLWDELYDEAILI 116

Query: 509 PNKT 520
           PN T
Sbjct: 117 PNMT 120


>AB016796-1|BAA74732.1|  441|Caenorhabditis elegans Seryl-tRNA
           synthetase protein.
          Length = 441

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 10/64 (15%)
 Frame = +2

Query: 359 EEIKQNIKIRKGVGDIDRVMQLYKIIXKTSE----------DNHEYERIKQDLYEALSIL 508
           E I++NI  RKGVGDID+V + + +I K  +             +Y+++  +LY+   ++
Sbjct: 57  EAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKYKQLWDELYDEAILI 116

Query: 509 PNKT 520
           PN T
Sbjct: 117 PNMT 120


>U50309-3|AAG24138.2|  343|Caenorhabditis elegans Seven tm receptor
           protein 145 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 534 STKGWVLFGKILSASYKSCFILSYS*LSSEVFXIILYNCITLSISPTPFRILIFCF 367
           S K +   G  L+  Y +CF L  S LS++ F   L  C   S+S    RIL + F
Sbjct: 76  SLKYFKTLGFNLTCLYCACFALVISLLSAQFFYRFLAVCKPHSLSHGEERILFYLF 131


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 383 IRKGVGDIDRVMQLYKIIXKTSEDNHEYERIKQD 484
           IR+   D  RVM++ K I    EDN  YE + +D
Sbjct: 282 IRRAKDDDQRVMEV-KFIATLQEDNKRYELLAKD 314


>AF016446-5|AAC24163.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein22 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  KYFILKYATKNDTYYVKLSVLFL 156
           K  IL Y T   TY++KLSV F+
Sbjct: 117 KASILNYKTYRFTYFIKLSVYFI 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,898,335
Number of Sequences: 27780
Number of extensions: 168015
Number of successful extensions: 385
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)