Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d09
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   6.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 234 ILTEVKYYQSRDLNNDNLKLGTKR 163
           + T  K Y++  +   +LKLGTK+
Sbjct: 223 VFTYYKIYRAAVIQTKSLKLGTKQ 246


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 516 LFGKILSASYKSCFILSYS*LSSEVFXIILYNCI 415
           L  K L A+Y+  F L ++ + +E+F  + ++ I
Sbjct: 216 LLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 329 SYNWDKFVXKIF*SLWC 279
           S  W+ F   IF  LWC
Sbjct: 122 SATWEVFKVWIFGDLWC 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,603
Number of Sequences: 438
Number of extensions: 2547
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)