Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d08
(577 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 76 4e-15
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 71 2e-13
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 56 3e-09
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 45 7e-06
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 35 0.010
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 33 0.040
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.16
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 29 0.37
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 29 0.49
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 2.0
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo... 27 2.6
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 26 3.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 75.8 bits (178), Expect = 4e-15
Identities = 37/99 (37%), Positives = 59/99 (59%)
Frame = +3
Query: 114 LTNAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKL 293
LT+ Q + REAF+L D +G I + + V +++LG PT ELQ MI VD G +
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 294 SFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSGTYLT 410
F F T + RK+ D++ ++ ++F++FD D +G Y+T
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNG-YIT 103
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +3
Query: 129 EQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKLSFENF 308
E+++REAF + D G G I E+ + +LG + EE+ MIR D G +++E F
Sbjct: 84 EEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEF 143
Query: 309 ETAIMRK 329
I K
Sbjct: 144 SRVISSK 150
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/98 (34%), Positives = 54/98 (55%)
Frame = +3
Query: 105 KLTLTNAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDT 284
++ +T Q QD+ EAF L D + I + R A++ALG+ E+ ++R DK
Sbjct: 28 RVEITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGK 87
Query: 285 GKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSG 398
G L E+F + KI+ D +I ++F LFDDD++G
Sbjct: 88 GYLQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETG 125
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Frame = +3
Query: 45 AYSNSEEDLNQSSKVNEIKAKLTLT--NAQEQDLREAFNLLDYTGEGKIRAEDF-RVAIK 215
A+ + D + + +E++A + NA++ ++ + D TG+G ++ EDF RV +
Sbjct: 42 AFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTE 101
Query: 216 ALGYEPTNEELQTMIRAVDKGDTGKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDS 395
+ EE++ D +TGK+S N + +++ D ++ FD D
Sbjct: 102 KIVERDPLEEIKRAFELFDDDETGKISLRNLR-RVAKELNENIDDQELEAMIEEFDLDQD 160
Query: 396 G 398
G
Sbjct: 161 G 161
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 56.4 bits (130), Expect = 3e-09
Identities = 32/116 (27%), Positives = 61/116 (52%)
Frame = +3
Query: 51 SNSEEDLNQSSKVNEIKAKLTLTNAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYE 230
++S+ Q++K A LT++Q Q+L+EAF LLD G+G I ED + + +L +
Sbjct: 21 TSSQRVAAQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQD 80
Query: 231 PTNEELQTMIRAVDKGDTGKLSFENFETAIMRKIMALDSDGDIMKSFRLFDDDDSG 398
+ + + M +++ ++ F TA+ + + D++++F FDD SG
Sbjct: 81 ASEDSINHMFESINP----PINLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSG 132
Score = 33.5 bits (73), Expect = 0.023
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +3
Query: 135 DLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKLSFENFET 314
DL EAF+ D T GKI R A+ ++G +E+++++R+ G +E F
Sbjct: 118 DLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVESILRSYT--SHGVFYYEKFVD 175
Query: 315 AI 320
AI
Sbjct: 176 AI 177
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 45.2 bits (102), Expect = 7e-06
Identities = 26/91 (28%), Positives = 48/91 (52%)
Frame = +3
Query: 126 QEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKLSFEN 305
Q +++EAF L D +G I +++LG T+ EL + + GD + +
Sbjct: 7 QTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL--GDA--IDEKK 62
Query: 306 FETAIMRKIMALDSDGDIMKSFRLFDDDDSG 398
F + + K+ +S+ + +K+FR+FD D+SG
Sbjct: 63 FMSFVSNKLRETESEEEYIKAFRVFDKDNSG 93
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 34.7 bits (76), Expect = 0.010
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = +3
Query: 120 NAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKLSF 299
+ + ++AF+L D G G+I ++A G PT E I ++ ++
Sbjct: 2 STDDSPYKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAE----ITEIESTLPAEVDM 57
Query: 300 ENFETAIMRKIMALDSDGD---IMKSFRLFDDDDSG 398
E F ++ + D GD +K F++FD D +G
Sbjct: 58 EQF-LQVLNRPNGFDMPGDPEEFVKGFQVFDKDATG 92
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 32.7 bits (71), Expect = 0.040
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +3
Query: 126 QEQDLREAFNLLDYTGEGKIRAEDFRVAIKAL-GYEPTNEELQTM----IRAVDKGDTGK 290
+E+ L+ AF + D +G I + + +K + G ++LQ + I VDK GK
Sbjct: 91 KEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGK 150
Query: 291 LSFENFETAI 320
+SFE F+ +
Sbjct: 151 ISFEEFKDIV 160
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.16
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +2
Query: 227 RAN*RGAADNDKSGGQRR--HREIELRKFRNGHN----EKDHGPGQRRR 355
R N R N+K GG RR +R+ + ++RN + +++H PG R+
Sbjct: 196 RRNSRDFPSNNKDGGYRRNNYRDRDSNRYRNSYRPSRPQREHSPGNYRK 244
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 29.5 bits (63), Expect = 0.37
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Frame = +3
Query: 120 NAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKALGYEPTNEELQTMIRAVDKGDTGKLSF 299
NA + L E F D GK+ E+F+ + L T E+ + + G + K+S
Sbjct: 329 NASMEFLEETFQKADADHSGKLSFEEFQHFVSLL---KTRSEIVDIFKEYTSG-SDKMSL 384
Query: 300 ENFETAIMRKIMA-LDSDG--DIMKSFRLFDDDDSG 398
E F + A LDSD + SF DD G
Sbjct: 385 EQFRHFLSTSQKARLDSDSIRTLYVSFCSNDDSKMG 420
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 29.1 bits (62), Expect = 0.49
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +3
Query: 114 LTNAQEQDLREAFNLLDYTGEGKIRAEDFRVAIKAL--GYEPTNEELQTMIRAVDKGDTG 287
LTN + L + FN LD G+G + D IKA + + +E++ IR V+ +G
Sbjct: 13 LTNEEILTLTDQFNKLDVDGKGYL---DQPTTIKAFEDSKKGSYDEVREAIREVNVDSSG 69
Query: 288 KLSFENF 308
++ E+F
Sbjct: 70 RVEPEDF 76
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/36 (27%), Positives = 25/36 (69%)
Frame = +3
Query: 39 TIAYSNSEEDLNQSSKVNEIKAKLTLTNAQEQDLRE 146
TI + S+ D+ ++ +N++K+++T+T+ +DL +
Sbjct: 269 TIRHLESQSDIINTT-INDLKSQMTITDESSEDLEK 303
>SPCC1020.03 |||mitochondrial iron ion
transporter|Schizosaccharomyces pombe|chr 3|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -2
Query: 537 HRQNPTEFLCEHYFLSFS*ILRPISVRRNLYRHRQSFLQ 421
H NP++ L EH F++ I + ++ L+R ++ Q
Sbjct: 186 HSHNPSQLLFEHPFMALGLIFGSVVLKEWLFRKTRTVAQ 224
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 26.2 bits (55), Expect = 3.4
Identities = 25/91 (27%), Positives = 44/91 (48%)
Frame = +3
Query: 33 SGTIAYSNSEEDLNQSSKVNEIKAKLTLTNAQEQDLREAFNLLDYTGEGKIRAEDFRVAI 212
+G +AYS + ++S+K + + + TLT A+E++ +EA L K R ++
Sbjct: 520 AGGVAYSEYVKQNSKSAKKTKKRQRDTLT-AEEKEEKEAKELSKMMMSNKQRKLYSKLKN 578
Query: 213 KALGYEPTNEELQTMIRAVDKGDTGKLSFEN 305
+ E N L+ R ++K KL EN
Sbjct: 579 ENSKNENYNNALRNRKRDIEK--RKKLKVEN 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,772
Number of Sequences: 5004
Number of extensions: 40890
Number of successful extensions: 160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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