Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d07
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265...    31   1.1  
07_03_0337 + 16918613-16919078,16921610-16921725,16922039-169222...    29   3.3  
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761...    29   3.3  
01_01_0473 - 3478660-3480338,3480507-3480609                           29   4.3  
03_05_0299 + 22887603-22887797,22887891-22887986,22888089-228881...    28   7.6  
01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    28   7.6  

>01_03_0289 -
           14725832-14726114,14726216-14726298,14726432-14726545,
           14727830-14728199,14728726-14728856,14728970-14729078,
           14729257-14729378,14729522-14729625,14729849-14729953,
           14730034-14730192,14730336-14730391,14730576-14730627,
           14730725-14731031
          Length = 664

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 398 ELHYKVLDTIFQNLHKKMKEIDPYYNRYSSTVHH 499
           ++ YK L+T++ + ++K K++D YY      V H
Sbjct: 42  QVSYKGLETLYDDGYQKAKDLDYYYRSLGELVEH 75


>07_03_0337 +
           16918613-16919078,16921610-16921725,16922039-16922208,
           16922509-16922602,16923371-16923457,16923529-16923609,
           16923800-16923925,16924541-16924649,16924723-16924802,
           16925401-16925529,16925605-16925705,16926075-16926208,
           16926307-16926404,16926488-16926607,16927008-16927022,
           16927930-16927957,16928066-16928118,16928446-16928517,
           16928605-16928652,16928928-16929033,16929110-16929168,
           16929792-16929887,16929942-16929959
          Length = 801

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +2

Query: 182 GAILSTSSQPQRPQEQPTQKEKTGFNRSSRAPESKCKEGISDKVPYNPKITNLESLLADI 361
           GA  S   +  + Q +  +KE     ++ +A E+  +         + K+ +L + L   
Sbjct: 97  GAAESELVKGLKEQVERLRKEVEEHKQTQKATEAALEHVNVAYAEADAKVQDLTAKLTQA 156

Query: 362 SVRYI-QLKESDFELHYKVLDTIFQNLHKKMKE 457
             +   +LKE D +  Y  LDT FQ LHK+ K+
Sbjct: 157 QQKMDKELKERDEK--YVELDTKFQRLHKRAKQ 187


>05_03_0619 +
           16274255-16274396,16274775-16274848,16275111-16276139,
           16276484-16276702,16277228-16277250,16277482-16277606,
           16279480-16279670,16280202-16280360,16281359-16281598
          Length = 733

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
 Frame = +2

Query: 191 LSTSSQPQRPQEQPTQKEKTGFNRSSRAPESK-----CKEGISDKVPYNPKITNLESLLA 355
           L T   P  P+  P+++ +   N + R    K         I   VPY+ +   + S+ +
Sbjct: 365 LCTHRIPIEPKSSPSKEPQRWLNNAMREVVKKDVLKLLHTRIIYPVPYS-EWRCMMSIFS 423

Query: 356 DISVRYIQLKESDFELHYKVLDTIFQNLHKKMKEIDPYY 472
           D+    +++   DF ++ K  D   QNL K ++     Y
Sbjct: 424 DMIEEIVEVFVDDFSVYGKTFDHCLQNLDKVLQRCQEKY 462


>01_01_0473 - 3478660-3480338,3480507-3480609
          Length = 593

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
 Frame = +2

Query: 149 ESLLRSFINILGAILSTSSQPQRPQEQPTQ------KEKTGFNRSSRAPESKCKEGISDK 310
           + L  +  ++ G + ST SQ Q+   + ++      K+ +  N++    E+K +   S+K
Sbjct: 420 QKLKEANASLEGKLTSTESQLQQLHAEKSEASISSEKQISDLNQAIADLETKLELLSSEK 479

Query: 311 VPYNPKITNLESLLADISVRYIQLKESDFELHYKVLDTI 427
              + K+    SLL D++ R  +++E D  LH   L+ +
Sbjct: 480 TTVDNKVA---SLLTDVTARDEKIREMDSHLHQLHLEHV 515


>03_05_0299 +
           22887603-22887797,22887891-22887986,22888089-22888172,
           22888573-22888733,22889458-22889575,22889914-22890049,
           22890351-22890529,22890690-22890929
          Length = 402

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 642 RHVWVSNFISLSFRLFVFSWKQRGTPISITMSNSSGLFIR 523
           R++ VSN  S     FV + K +G P  +++ NS  L +R
Sbjct: 220 RYIGVSNETSYGVMEFVHAAKVQGLPKIVSIQNSYSLIVR 259


>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 488 CSNICCSMDLFLSFSCEDFGILYLALCN 405
           CS +C   + F +  CE+ G   LALC+
Sbjct: 18  CSVLCLGAERFGARECEELGFTGLALCS 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,533,455
Number of Sequences: 37544
Number of extensions: 272976
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)