Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d06
         (528 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U38945-1|AAB01737.1|  173|Homo sapiens CDKN2A protein.                 29   7.6  
AY867077-1|AAW68950.1|  107|Homo sapiens anti-tetanus toxoid imm...    29   7.6  
AY866996-1|AAW68872.1|  107|Homo sapiens anti-tetanus toxoid imm...    29   7.6  

>U38945-1|AAB01737.1|  173|Homo sapiens CDKN2A protein.
          Length = 173

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -2

Query: 440 ISQHPNHDSEQPPELLKTAVPRRGAKLNARSTSILVRGASLGNG 309
           + + P HD  Q P     A PRRGA+L     S L R      G
Sbjct: 101 LPRRPGHDDGQRPSGGAAAAPRRGAQLRRPRHSHLTRARRCPGG 144


>AY867077-1|AAW68950.1|  107|Homo sapiens anti-tetanus toxoid
           immunoglobulin light chain variable region protein.
          Length = 107

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 241 TASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTGGKASWLLKAWLF*VLKTGVKFRY 65
           T S  S S+S G   +TTCRT++  +          GKA  LL  +    L+TGV  R+
Sbjct: 5   TQSPSSLSASVGDRVTTTCRTSQSIFINLNWFQQKPGKAPKLL-IYSASTLQTGVPSRF 62


>AY866996-1|AAW68872.1|  107|Homo sapiens anti-tetanus toxoid
           immunoglobulin light chain variable region protein.
          Length = 107

 Score = 29.5 bits (63), Expect = 7.6
 Identities = 21/59 (35%), Positives = 29/59 (49%)
 Frame = -3

Query: 241 TASNGSDSSSRGTEYSTTCRTARRAYSKARMACDTGGKASWLLKAWLF*VLKTGVKFRY 65
           T S  S S+S G   +TTCRT++  +          GKA  LL  +    L+TGV  R+
Sbjct: 5   TQSPSSLSASVGDRVTTTCRTSQSIFINLNWFQQKPGKAPKLL-IYSASTLQTGVPSRF 62


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,211,866
Number of Sequences: 237096
Number of extensions: 1346957
Number of successful extensions: 5621
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5608
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5103531180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)