Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d04
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    31   0.11 
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     28   1.4  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    28   1.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   3.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   3.2  
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe...    26   4.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   4.3  
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al...    26   5.6  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    26   5.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   7.5  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   7.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    25   7.5  

>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +3

Query: 264 CINFPRNLNYDSPSSCSVTCGRNLNIEFRSIVDNFLIRLGTAVAANFVSNLE 419
           CI   RNLNY+   SC V   +   +E  S+ D+      T +++ FV +L+
Sbjct: 631 CIKKRRNLNYNENLSCKVDLDKKKMLETLSLSDSPNPESITFISSKFVDHLQ 682


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 516 HPLSKLVSWLP-YFKNTFVKPFTDSPDYSFTTDEYLAVVPDLPI 644
           H L+   S L    +NTFVK   ++ D S T D++ ++V D  I
Sbjct: 578 HELTPFASQLAKQLRNTFVKLMQETMDESTTVDDFDSLVDDKSI 621


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -1

Query: 376 LMRKLSTIERNSMLRFLPHVTLQLDGLS*FKFLG 275
           LM   + ++++ M   +P +TL +DGLS F  LG
Sbjct: 98  LMLTTNLLKKDLMSSKVPEITLAIDGLSHFSTLG 131


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 507 IAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYL 620
           IA  PLS    +L Y KN F+  F    + S +TD+ L
Sbjct: 645 IAMSPLSNNALFLAYDKNPFLTYFKRGLNVSLSTDDPL 682


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 276  PRNLNYDSPSSCSVTCGRNLNIEFRSI---VDNFLIRLGT 386
            PR+ + D PSS    CG  L   F+SI   ++ F++++GT
Sbjct: 887  PRDPDADHPSSLYHICGYRLTKFFKSIFRPMNVFVLKVGT 926


>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 590

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 384 TAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPL 524
           T V+  F+  L+   +E+  EK+   D   +   F  LKDE    PL
Sbjct: 465 TKVSKTFLKKLDAFHEEKLREKINSSDKGDVSYEFELLKDETVFSPL 511


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 513  KHPLSKLVSWLPYFKNTFVKPFTDSPDYSF-TTDEYLAVV 629
            K  L  + SWL  F + F + F D   + F  TDEY +V+
Sbjct: 1042 KRELKMVYSWLQLFYD-FFRNFQDIAPFDFLNTDEYKSVM 1080


>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
           1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 555 KNTFVKPFTDSPDYSFTTDEYLAVV 629
           K TF++ +TD   Y +  DEY  ++
Sbjct: 51  KKTFIESWTDYETYGWGKDEYYPII 75


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 260 REYHFPLDRFIVSEHQGQHGN 198
           R Y +P D F+VS  + Q GN
Sbjct: 192 RSYFYPQDSFLVSHAEWQDGN 212


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 294 DSPSSCSVTCGRNLNI--EFRSIVDNFLIRLGTAVAANFVSNLEELCQERGSEKLRLP 461
           + PSS SV  GR+LN+  +F  +++  L    T V  +F   L+   Q   S+K  LP
Sbjct: 70  EPPSSKSVEFGRHLNMRHDFSELLEQPLTTSKTRVFKSFNEKLKGKPQLVKSDKGVLP 127


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 450 LRLPDAL--VLEAPFNNLKDEIAKHPLSKLVSWLPYFKNTFVKPFTDSPDYSFTTDEYLA 623
           LR+P A   VL  PF  L+ +I    +  ++  L +     + P   S   + T  + + 
Sbjct: 322 LRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTAPEILPEWHSSKGNVTATKQMY 381

Query: 624 VVPDLPILMLHSK 662
           +    P+L+LH K
Sbjct: 382 IESLPPVLILHLK 394


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 277 RET*TTIARLVAAL---HAGETSTLSSVRSWTI 366
           R + TTI R  A++   H G+TSTLS  RS +I
Sbjct: 309 RSSRTTIRRTGASIRTIHRGKTSTLSGNRSHSI 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,879
Number of Sequences: 5004
Number of extensions: 50489
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)