Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d04
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    52   4e-07
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U88308-18|AAK68217.1|  198|Caenorhabditis elegans Uncoordinated ...    27   9.1  
U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated ...    27   9.1  
U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated ...    27   9.1  
U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated ...    27   9.1  
U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated ...    27   9.1  
AF144262-1|AAD37370.1|  289|Caenorhabditis elegans AP180-like ad...    27   9.1  
AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like ad...    27   9.1  
AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like ad...    27   9.1  
AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    27   9.1  
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
 Frame = +3

Query: 378 LGTAVAANFVSNLEELCQERGSEKLRLPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF- 554
           +GT V+   V +L        S + + P  L+LE+PFNNLKD +  HP+  + SW+  F 
Sbjct: 192 MGTGVSCKLVQDL--------SREQQPPCGLILESPFNNLKDAVTNHPIFTVFSWMNDFM 243

Query: 555 -KNTFVKPFTDSPDYSFTTDEYLAVVPDLPILMLHSKGD 668
             +  ++P  +S   +  +D+ + +V   PI++LH++ D
Sbjct: 244 VDHIIIRPL-NSVGLTMRSDKRIRLV-SCPIIILHAEDD 280


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 214 RGSTATWNTRTPAVSEAPVAKRSPKTMLRRKYST 113
           RGSTA   TR P  + AP A R+P    R   +T
Sbjct: 298 RGSTAAPGTRAPPATRAPPATRAPPATTRAPPAT 331


>Z36238-8|CAH04738.1|  448|Caenorhabditis elegans Hypothetical
           protein R74.8b protein.
          Length = 448

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z36238-7|CAA85278.2|  506|Caenorhabditis elegans Hypothetical
           protein R74.8a protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 213 LMFRYNKTVQRKVVFSNCINFPRNLNYDSPSSCSVTCGRNLN 338
           LM R  K    ++V +  + +P  + YD  S   + C RNLN
Sbjct: 186 LMVRKKKFPVDELVNNEKLGYPLGVTYDEKSKYWIICDRNLN 227


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 648 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 496
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 648 SKSEGPEPRRDTHQS*TNSREN-R*TVLRTYS*SRAARKPVSIEDVWRFRPS 496
           S+S  PE RRD     T  +EN   + LR     + A +  S +D W  +P+
Sbjct: 380 SRSRSPEKRRDKEDRKTEKKENENESSLREKLLEKKAARKDSSDDEWEEKPT 431


>U88308-18|AAK68217.1|  198|Caenorhabditis elegans Uncoordinated
           protein 11, isoform f protein.
          Length = 198

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 92  TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 127


>U88308-17|AAK68214.1|  657|Caenorhabditis elegans Uncoordinated
           protein 11, isoform c protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 551 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 586


>U88308-16|AAK68212.1|  586|Caenorhabditis elegans Uncoordinated
           protein 11, isoform a protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515


>U88308-14|AAK68213.1|  546|Caenorhabditis elegans Uncoordinated
           protein 11, isoform b protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475


>U88308-13|AAK68215.1|  534|Caenorhabditis elegans Uncoordinated
           protein 11, isoform d protein.
          Length = 534

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 428 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 463


>AF144262-1|AAD37370.1|  289|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 289

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 183 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 218


>AF144259-1|AAD37367.1|  546|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 546

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 440 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 475


>AF144257-1|AAD37365.1|  586|Caenorhabditis elegans AP180-like
           adaptor protein protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 238 TVLLYRNIRGSTATWNTRTPAVSEAPV-AKRSPKTM 134
           T  +  N +G+ A WNT T AVS  P  A  +P+ M
Sbjct: 480 TAQMSLNQQGAPAGWNTTTSAVSNNPFGATSAPQPM 515


>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 456 LPDALVLEAPFNNLKDEIAKHPLSKLVSWLPYF 554
           LPD +VLE  +    +E A     +    LPYF
Sbjct: 127 LPDVIVLEDQYETFLEEFASFQKKQFSEHLPYF 159


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 534 VSWLPYFKNTFVKPFTDSPDYSFTTDEYL 620
           V WLPY        F   P YS++ D Y+
Sbjct: 292 VCWLPYRGMVVYNSFVSDPKYSWSPDWYI 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,096
Number of Sequences: 27780
Number of extensions: 278233
Number of successful extensions: 947
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)