Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17d03
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161... 31 0.65
10_07_0053 - 12406958-12407011,12407012-12407168,12407280-124074... 30 1.5
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 30 1.5
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 29 2.6
06_03_0433 - 20718726-20719895 29 3.5
05_03_0280 - 11553011-11553052,11553810-11553872,11554304-115546... 29 3.5
04_04_1189 + 31586991-31587291,31587358-31587397,31587449-315875... 29 3.5
06_03_1324 + 29322459-29322515,29322720-29322819,29323049-293232... 28 6.1
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 28 8.0
>03_01_0204 +
1611837-1611840,1611926-1612048,1614570-1614659,
1615529-1616095,1616235-1616959,1617065-1617252,
1617331-1617778
Length = 714
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +2
Query: 410 MLMCTASFTVL-VFITPDMKVFFQRIGL--VIGIPAMILIIGLSFVMSCSECARKMPCNI 580
M +CT +F ++ + +T V IGL V GI A++ I+ FV+ + MP +
Sbjct: 636 MSICTLTFWIVSIIVTYAFPVMLSSIGLIGVCGIYAVVCIVSFIFVLIKVPETKGMPLAV 695
Query: 581 VCLVLAV 601
+ LAV
Sbjct: 696 IANSLAV 702
>10_07_0053 -
12406958-12407011,12407012-12407168,12407280-12407410,
12407592-12407727,12407953-12408224,12408604-12408893,
12408984-12409285,12409359-12409424,12409506-12409571,
12409855-12409926,12410013-12410084,12410207-12410281,
12410367-12410438,12410531-12410663,12411556-12411655
Length = 665
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 71 IRTMPKDKEINENSNEVQENRITEHSNEDTANERKSQNNE 190
I TMPK K +N N N++Q N SN + + QNN+
Sbjct: 142 ISTMPKLKYLNLNHNQLQGNMTDVFSNLPSLSTLYLQNNQ 181
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = +2
Query: 413 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCS--ECARKMPCNIVC 586
L+ TA+ +V + FF + G+ I +I L F++ C +K P N++
Sbjct: 47 LLLTAAVAAVVVKVRAISHFF--VSSHAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLIL 104
Query: 587 LVLAVIGMSTIVSFITVHYNTEILMYAMLATAVVV 691
L L + +S V + ++++ + + T VVV
Sbjct: 105 LGLFTVAISFAVGMTCAFTSGKVILESAILTTVVV 139
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/90 (23%), Positives = 42/90 (46%)
Frame = -1
Query: 514 NHGWYANY*ADPLKKHFHIGRDKHQNGE*CCAH*HYKNYNEHKTNEIIPSLRIIFQRRCA 335
+ G A+ A PL+K+ + D C AH + + +T+ +++ Q
Sbjct: 198 SRGSEASSNAPPLRKNASMSSDISDVSSQCSAH----SVSARRTSSWCFDEKVLIQSLYK 253
Query: 334 IIKSVAS*HPPVVLILSSIELVHHNTRIFS 245
++ SVA +P ++ I +L+H + R +S
Sbjct: 254 VMVSVAENNPVILYIRDVDQLLHRSQRTYS 283
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/35 (25%), Positives = 22/35 (62%)
Frame = +2
Query: 86 KDKEINENSNEVQENRITEHSNEDTANERKSQNNE 190
++KE+ +NE +E T ++E ++++ +N+E
Sbjct: 729 REKEMERRANEAKEKAATAENSESPESKKEKENSE 763
>06_03_0433 - 20718726-20719895
Length = 389
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Frame = +2
Query: 101 NENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVK-GTENERKNPSI--VVY 271
+E++NE Q N ++ SNE+ A ++++ +++ + L DD K GT++E + ++
Sbjct: 167 DESTNEDQSNVKSDGSNEEEAEKKEAVDSQNASE--SLSDDAKGGTDDEHSSGTLPDETG 224
Query: 272 QFYGAQNQNDWGMSGGNAFDNGAPPLEYDPKTRND 376
QN+N + D + + + + N+
Sbjct: 225 NLPSGQNENSQSDATSTTSDASSEAVHIETGSENE 259
>05_03_0280 -
11553011-11553052,11553810-11553872,11554304-11554666,
11554805-11554944,11556267-11556336
Length = 225
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 379 RSFCVHYSFYNVNVHSIIHRSGVYHARYE--SVFSKDRLSNWHTSHDFNYWA 528
RS HY YN V H YH+ Y+ S ++ ++ +HDF +A
Sbjct: 117 RSKIYHYKIYNGPVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFA 168
>04_04_1189 + 31586991-31587291,31587358-31587397,31587449-31587534,
31587535-31588097,31588250-31589913,31589956-31590066,
31590152-31591181,31591234-31591406,31591535-31591814,
31592275-31592331
Length = 1434
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 103 INFLIFWHCPNFLSL 59
+ +LIFWH PN LSL
Sbjct: 1365 LEYLIFWHLPNLLSL 1379
>06_03_1324 +
29322459-29322515,29322720-29322819,29323049-29323266,
29323767-29324305,29324396-29325125
Length = 547
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 488 LVIGIPAMILIIGLSFVMSCSECAR 562
L +GIPAM+L +GLS +++ S R
Sbjct: 224 LGLGIPAMVLAVGLSCLVAASRAYR 248
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/93 (22%), Positives = 37/93 (39%)
Frame = +2
Query: 413 LMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLV 592
L TA+ V + FF + +L + L + +K P N++ L
Sbjct: 43 LAMTAAVAAFVVKVRGVSEFFVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLG 102
Query: 593 LAVIGMSTIVSFITVHYNTEILMYAMLATAVVV 691
L + +S V + + +++ A TAVVV
Sbjct: 103 LFTVAISFAVGMTCAYTSGKVIFEAAALTAVVV 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,262,649
Number of Sequences: 37544
Number of extensions: 383314
Number of successful extensions: 1049
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -