Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17d03
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    40   0.002
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    31   0.59 
U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    28   5.5  
Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        28   7.2  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    27   9.6  
AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical ...    27   9.6  
AF061202-1|AAD10195.1|   48|Caenorhabditis elegans RAD51 long is...    27   9.6  
AF039710-5|AAB96689.2|  394|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 19/92 (20%), Positives = 42/92 (45%)
 Frame = +2

Query: 410 MLMCTASFTVLVFITPDMKVFFQRIGLVIGIPAMILIIGLSFVMSCSECARKMPCNIVCL 589
           M   TA+F V+  ++   + + +    V  I  ++ ++    +  C    R+ P NI+ L
Sbjct: 42  MFAITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVVAIALSCCGNLRRQFPVNIILL 101

Query: 590 VLAVIGMSTIVSFITVHYNTEILMYAMLATAV 685
            +  +  + +  F+T  YN + ++  +  T V
Sbjct: 102 TIFTLSAAVMTMFVTACYNVQSVLICLCITTV 133


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 488 LVIGIPAMILIIGLSFVMSCSECARKMPCNIVCLVLAVIGMST-IVSFITVHYNTEILMY 664
           L++ IP  IL   L   +  S  A K   N++CLV AV  +   +V+F+   + T +L Y
Sbjct: 13  LIVAIPG-ILFSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71

Query: 665 AMLATAV 685
             +++ +
Sbjct: 72  NYMSSTL 78


>U39674-2|AAY86211.1|   94|Caenorhabditis elegans Hypothetical
           protein C06E2.9 protein.
          Length = 94

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 664 IHQDLRVVMHRDERNNCGHSYNR*NKTHNVARHFSGTLRTRHHE 533
           +H+  R V H+    N GH ++R +K  NV+RHF      +HH+
Sbjct: 43  MHRFRRHVEHQKHSLNDGHLHSRNSK--NVSRHFVNDGHAQHHK 84


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = +2

Query: 65  KKIRTMPKDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTE-N 241
           K+  +  +  E  +   + +     E  +  T++E +  N  I    ++ G+  + T  N
Sbjct: 24  KRTASTVEGTEAKQMRGDTENRSDGEMDDVSTSSEIRHGNGFIENFRSQTGNSSRTTATN 83

Query: 242 ERKNPSIVVYQFYGAQNQNDWGMSGGN 322
           ER    +V+  F    NQND  M   N
Sbjct: 84  ERIKKKLVIKNFKANANQNDVAMGDTN 110


>Z80215-6|CAD56562.2| 1052|Caenorhabditis elegans Hypothetical
           protein C36B1.8b protein.
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +2

Query: 83  PKDKEINENSN--EVQENRITEHSNEDTANERKSQN-NEIHIDMTRLGDDVKGTENERKN 253
           PK+KE N +S   + Q N    HSN  + N++  +N N  H + +  G     T N    
Sbjct: 183 PKEKEKNTHSGNRQSQVNHNHHHSNHVSGNQQNRKNKNRDHSNQSYRGG---YTHNHNNY 239

Query: 254 PSIVVYQFYGAQNQNDWGMSGGNAFDNGAPPLEYDP 361
            S+   +  G  + +    S G    + APP+   P
Sbjct: 240 HSLENAKSSGFLSNSSLS-SAGQISASSAPPVSTTP 274


>Z80215-5|CAB02273.3| 1049|Caenorhabditis elegans Hypothetical
           protein C36B1.8a protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = +2

Query: 83  PKDKEINENSN--EVQENRITEHSNEDTANERKSQN-NEIHIDMTRLGDDVKGTENERKN 253
           PK+KE N +S   + Q N    HSN  + N++  +N N  H + +  G     T N    
Sbjct: 183 PKEKEKNTHSGNRQSQVNHNHHHSNHVSGNQQNRKNKNRDHSNQSYRGG---YTHNHNNY 239

Query: 254 PSIVVYQFYGAQNQNDWGMSGGNAFDNGAPPLEYDP 361
            S+   +  G  + +    S G    + APP+   P
Sbjct: 240 HSLENAKSSGFLSNSSLS-SAGQISASSAPPVSTTP 274


>Z74043-2|CAA98545.1|  243|Caenorhabditis elegans Hypothetical
           protein T19B10.4a protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
 Frame = +2

Query: 101 NENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTR----LGDDVKGTENERKNPSIVV 268
           N+     Q N+  ++ N    N+ +  +    + M      +G    G       P+  +
Sbjct: 34  NQKKGNNQNNKNNKNQNGGNRNQNRQHHQPPMMQMVPPFGPMGPGGPGGPGFMGPPNGNM 93

Query: 269 YQFYGAQNQNDWGMSGGNAFDNGAPPLEYDPKTRND 376
             F G   +N  G + GN   NGAPP  Y+  + N+
Sbjct: 94  NFFNGQNRRNGSGKNNGNR--NGAPPSGYNGPSANN 127


>Z68159-7|CAA92286.1|  604|Caenorhabditis elegans Hypothetical
           protein C33D9.8 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 65  KKIRTMPKDKEINENS-NEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDDVKGTE 238
           K+  T  + +EIN+++ NE+ +  I++ S      +   + NE+ +   R+ + V G E
Sbjct: 457 KETETFEEKREINKSATNELTDMEISKFSKIIATGKNARKWNEMKVQFERIDNIVNGLE 515


>U61954-5|AAK29812.1|  575|Caenorhabditis elegans Hypothetical
           protein F41H10.4 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 86  KDKEINENSNEVQENRITEHSNEDTANERKSQNNEIHIDMTRLGDD 223
           K+K + EN    +E       NE  A + K  NN +  +  +L DD
Sbjct: 194 KEKVVEENLRIRKEIEELRRENEGIAEKMKESNNAVMDENKKLSDD 239


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 125 ENRIT-EHSNEDTANERKSQNNEIHIDMTRLGDDVKGTE-NERKNPSIVVYQFYGAQNQN 298
           ENR   E  +  T++E +  N  I    ++ G+  + T  NER    +V+  F    NQN
Sbjct: 6   ENRSDGEMDDVSTSSEIRHGNGFIENFRSQTGNSSRTTATNERIKKKLVIKNFKANANQN 65

Query: 299 DWGMSGGN 322
           D  M   N
Sbjct: 66  DVAMGDTN 73


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
           protein 8 protein.
          Length = 1206

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 273 SSMELKIRTTGGCQEATLLIMAHLRWNMI 359
           S + + +RTT    EAT  ++ H  WN +
Sbjct: 203 SKVGISLRTTNSIAEATCAMLRHYGWNKV 231


>AL023838-6|CAB61038.2|  395|Caenorhabditis elegans Hypothetical
           protein Y43C5A.6a protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 379 RSFCVHYSFYNVNVHSI 429
           RS C H   YN+N+HSI
Sbjct: 13  RSLCTHKWLYNLNLHSI 29


>AF061202-1|AAD10195.1|   48|Caenorhabditis elegans RAD51 long
           isoform protein.
          Length = 48

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 379 RSFCVHYSFYNVNVHSI 429
           RS C H   YN+N+HSI
Sbjct: 13  RSLCTHKWLYNLNLHSI 29


>AF039710-5|AAB96689.2|  394|Caenorhabditis elegans Hypothetical
           protein C46E10.4 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 83  PKDKEINENSNEVQENRIT--EHSNEDTANERKSQNNEIHIDMTRLGDDVKGTENERKNP 256
           P   E+N      +E  I   EH   +     ++Q N++HI       +V+    +R+NP
Sbjct: 96  PALAELNLRDRARREREILREEHYQREDDERLRAQQNQVHIRYGETQYEVRRNFGQRRNP 155

Query: 257 SIVVYQFYGA 286
                + + A
Sbjct: 156 EEAFIKLFDA 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,951
Number of Sequences: 27780
Number of extensions: 378749
Number of successful extensions: 1257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)