Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c24
(649 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 199 1e-51
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 195 2e-50
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 38 0.007
06_03_0159 - 17358853-17360781 29 2.4
07_03_0535 - 19198130-19198139,19199901-19199995,19200095-192001... 28 5.6
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 28 5.6
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 28 5.6
02_04_0607 - 24302582-24303075,24303150-24304197 28 5.6
09_06_0002 + 20121846-20123308,20123420-20123426 28 7.4
01_01_0066 - 513578-513730,513809-513920,514000-514163,514369-51... 28 7.4
06_01_0612 - 4429605-4431152 27 9.7
02_04_0197 - 20842893-20843492,20843562-20843912 27 9.7
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 199 bits (486), Expect = 1e-51
Identities = 89/163 (54%), Positives = 122/163 (74%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 337
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 338 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 517
DEGIRFRGLSIPECQ+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+
Sbjct: 94 PDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSS 153
Query: 518 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGV 646
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+
Sbjct: 154 VPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGM 196
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 195 bits (476), Expect = 2e-50
Identities = 87/163 (53%), Positives = 120/163 (73%)
Frame = +2
Query: 158 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 337
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 338 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 517
+EGIRFRGLSIPECQ+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+
Sbjct: 94 PEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSS 153
Query: 518 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGV 646
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+
Sbjct: 154 VPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGM 196
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 332 LDADEGI-RFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAA 508
+D DEGI R+RG I E L ++ E + +LL+ G +PT++Q +
Sbjct: 140 IDGDEGILRYRGYPIEE----LAESSSFVE-----VAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 509 RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALN 607
+ +P ++ ++ MP HPM ++A++ L+
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLS 223
>06_03_0159 - 17358853-17360781
Length = 642
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 261 PTLVEPCFFRNSRIFSCSLG--IFSWRILFKFVCSALRPR 148
P L+ P F R+ R F L + S+ +L K VCS+L PR
Sbjct: 144 PHLLPPFFSRSLRRFPGRLAPTLLSFNLLLKCVCSSLVPR 183
>07_03_0535 -
19198130-19198139,19199901-19199995,19200095-19200154,
19200241-19200349,19200438-19200604,19200694-19200813,
19200901-19200987,19201068-19201196,19201284-19201362,
19201451-19201530,19201646-19201726,19201812-19201874,
19201963-19202139,19202381-19202476,19202610-19202729,
19202825-19202933,19203016-19203235,19203320-19203405,
19203491-19203552,19203649-19203685,19203790-19203848,
19203952-19204037,19204142-19204313
Length = 767
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 351 IPSSASSTEVSQTRPLIPRMPPYIISTVTSPT 256
+PS+A S +V+ + P I R PP + + T PT
Sbjct: 162 VPSNAKSADVASSTPKIQRPPP-VKAVTTVPT 192
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 446 LVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNN-MPGKLHPMSQF 583
L+ GD+ A A++ +W RA++ HV + N +P L S F
Sbjct: 254 LIPGDMVINAMMAAINSQWNKRAQVIYHVTSAHQNPLPVSLIEESMF 300
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 372 MDRPRKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPTLVEP 244
MDR R+R P S S S P PR P + V P L EP
Sbjct: 1 MDRLRRRNPKSVPSGSSSMKPPRPPRGPSFQAPAVPRP-LPEP 42
>02_04_0607 - 24302582-24303075,24303150-24304197
Length = 513
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +1
Query: 268 HS*YDVRWHAWNQRSGLGNLCAGCR*RNPFPWSIHP*VPTATAQG*GW 411
H DVR H R G G AG + PF W+ HP + T A+ GW
Sbjct: 85 HGHVDVRHH---HRGGAG---AGGAQQGPFQWADHPRLVTEAAEN-GW 125
>09_06_0002 + 20121846-20123308,20123420-20123426
Length = 489
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 327 LCWMPMKESVSVVYPSLSANSNCPRLRVEKNHYPK--VFSGFSS 452
+C P+++S S+ +PS S+++NC + +PK V GFS+
Sbjct: 228 VCLSPLQQS-SLAHPSPSSSTNCSLWMTKSAIFPKEVVTRGFSA 270
>01_01_0066 -
513578-513730,513809-513920,514000-514163,514369-514521,
514598-514736,514823-514923,514995-515666,515953-516038,
516112-516777,516874-517128,517231-517358,518645-518799,
518880-519133,519186-519260,519324-519399,519511-519644,
519871-520153,520692-520850,520940-521038,521142-521310,
521423-521653,522002-522114,524179-524310,524389-524469,
525641-525763
Length = 1570
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 376 RDG*TTETDSFIGIQHRGFPNQTFDSTHATVHH 278
+DG D IG++ + FP + D T A HH
Sbjct: 407 KDGELDSKDLDIGLKRKPFPRKMEDPTSADAHH 439
>06_01_0612 - 4429605-4431152
Length = 515
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 360 RKRIPSSASSTEVSQTRPLIPRMPPYIISTVTSPT-LVEPCFFR 232
R+R+P S S V+ P P++PP + ST P+ + P F R
Sbjct: 74 RRRLPPSPSVRVVAIPFPAHPQIPPGVESTDALPSQSLFPAFLR 117
>02_04_0197 - 20842893-20843492,20843562-20843912
Length = 316
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Frame = +2
Query: 14 DRSRASCRDLCGSLRSAALKMALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQ 193
D + C D C +LR A + + ++SRL ++ + + R +SA + + +I +
Sbjct: 76 DETSRLC-DACRALRLGAASLEGYSDSASRLASALRSSHLSFEVTRAMSACRRDAMAIRE 134
Query: 194 EKIPKEQEKIREFRKKHGSTKVGE-VTVDMMYGGMRGIKGLVWETSVL 334
E + E R + + ++ E + D + G G +G++ T +L
Sbjct: 135 -----ENRVLVETRAEALALRLAETIPPDAKFTGFNGFRGVLCATRML 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,809
Number of Sequences: 37544
Number of extensions: 370968
Number of successful extensions: 1191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -