Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c23
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical p...    29   1.9  
Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily ass...    28   4.4  
Z49126-3|CAA88941.2|  374|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>Z81568-7|CAD18874.1|  497|Caenorhabditis elegans Hypothetical
           protein K08E3.5d protein.
          Length = 497

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 ESCLRPFPPAFMKSGIKDMDELLSVITDVPALDLVLQQLDNL 463
           E  +RP+       G K    ++SV  D+  LDL +QQ+  L
Sbjct: 98  EGAIRPYKSLGTSMGCKGPKSVISVRNDLTFLDLTMQQIQTL 139


>Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 122 IHKMEREHEVLSETGTNCNIASVSETMSDINQTKLDTLEKK 244
           + ++E++ E L +  T  ++ +  ETM  +N+TK + ++KK
Sbjct: 108 VREIEQQREALEKQRTE-DLVNHQETMRKLNETKFEAIKKK 147


>Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = +2

Query: 122 IHKMEREHEVLSETGTNCNIASVSETMSDINQTKLDTLEKK 244
           + ++E++ E L +  T  ++ +  ETM  +N+TK + ++KK
Sbjct: 108 VREIEQQREALEKQRTE-DLVNHQETMRKLNETKFEAIKKK 147


>Z81516-6|CAB04206.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 344 CLRPFPPAFMKSG--IKDMDELLSVITDVPALDLVLQQLDNLEAL 472
           CL+ F     +SG  I  + +++   T+ P  D+VL+Q+D++ A+
Sbjct: 204 CLKSFMTLAYESGALIAGLGKMIHAFTNRPDEDIVLEQIDDIVAM 248


>Z75535-5|CAA99829.1|  524|Caenorhabditis elegans Hypothetical
           protein F26H9.1 protein.
          Length = 524

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
 Frame = +2

Query: 344 CLRPFPPAFMKSG--IKDMDELLSVITDVPALDLVLQQLDNLEAL 472
           CL+ F     +SG  I  + +++   T+ P  D+VL+Q+D++ A+
Sbjct: 204 CLKSFMTLAYESGALIAGLGKMIHAFTNRPDEDIVLEQIDDIVAM 248


>U97592-1|AAB52871.3|  638|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 150, isoform b protein.
          Length = 638

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +2

Query: 158 ETGTNCNIASVSETMSDINQTKLDTLEKKAVHLRLVLEK 274
           E GTN NI  + +T S +NQ  L T  + +  L L+ E+
Sbjct: 133 EEGTNLNIEFLKDTTSPMNQLLLLTTIETSTLLNLIEER 171


>Z49126-3|CAA88941.2|  374|Caenorhabditis elegans Hypothetical
           protein DH11.4 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 389 DMDELLSVITDVPALDLVLQQLDNLEALP-NISDIIDLLFYVLVRLKEPTLKTV-PTDVH 562
           D+ ELL+++T  P +  V   +   +ALP N +    ++ +   RL E    TV P+ VH
Sbjct: 217 DVCELLTILTYAPTVQFVTTTVKKAKALPYNNAPFARIMLFEGRRLMEQKQTTVNPSLVH 276

Query: 563 E 565
           +
Sbjct: 277 K 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,792,089
Number of Sequences: 27780
Number of extensions: 261448
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)