Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c17
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    28   0.52 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    27   0.69 
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   0.91 
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    25   4.9  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   4.9  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    24   8.5  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 27.9 bits (59), Expect = 0.52
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 21  LNNTKRY-FLYFENIYRMGFFFSIVKTSIIFGAGVYTGVYVAQNYQIEKVEDPKALFEKA 197
           L N K Y F++F+++         V   ++    VY G +V++  +  KVE  KA F   
Sbjct: 204 LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF--T 261

Query: 198 QAFVKSKLSEVQD 236
             ++K+  +E+ +
Sbjct: 262 NVYIKNLDTEITE 274


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 27.5 bits (58), Expect = 0.69
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 33  KRYFLYFENIYRMGFFFSIVKTSI-IFGAGVYTGV 134
           K  FL F+N+  + F F ++  SI IFG  V  G+
Sbjct: 103 KNIFLQFQNVANLFFLFLVILQSISIFGEQVNPGL 137


>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 3   NNTKNVLNNTKRYFLYFENIYRMGFFFSIVKTSIIFG 113
           N T+ +L   K+Y   F N+Y    F SIV+  +  G
Sbjct: 370 NMTEMILPLVKQYDHKFRNLYSPNIFLSIVQALVFCG 406


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   NNTKNVLNNTKRYFLYFENI 62
           NN  N+L N  +YF++ +NI
Sbjct: 123 NNILNMLVNLMKYFVHMDNI 142


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 132 VYVAQNYQIEKVE-DPKALFEKAQAFVKSKLSEVQDG 239
           ++ AQ   +++V+ D   +FEK QA+V    +  Q+G
Sbjct: 721 IHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQEG 757


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 9/41 (21%), Positives = 19/41 (46%)
 Frame = -1

Query: 366 FFFXLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 244
           FF+    +Y T ++  I+N+   ++ +   N      N +L
Sbjct: 100 FFYSSTLLYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHL 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,114,536
Number of Sequences: 5004
Number of extensions: 17267
Number of successful extensions: 53
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)