Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c17
         (366 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical...    34   0.036
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     27   5.4  
U88165-6|AAK21396.2|  214|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    26   9.5  
U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    26   9.5  

>AF067211-10|AAY55842.1|   50|Caenorhabditis elegans Hypothetical
           protein B0205.12 protein.
          Length = 50

 Score = 33.9 bits (74), Expect = 0.036
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 102 IIFGAGVYTGVYVAQNYQIEKVEDPKALFEKAQAFVK 212
           +  G G Y G Y AQNY+++K+     + +  + ++K
Sbjct: 8   LTMGLGAYAGAYFAQNYELQKLPSASEMMKNVEDYLK 44


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = -1

Query: 366 FFFXLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 244
           +F  ++C+   ++ + +  +YK ++ +  H   S  PN NL
Sbjct: 502 YFESISCLLAHLLKEPLFTVYKDVLLLWHHFCTSRLPNMNL 542


>U23516-8|AAG38879.1|  167|Caenorhabditis elegans Hypothetical
           protein B0416.2 protein.
          Length = 167

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 81  FSIVKTSIIFGAGVYTGVYVAQNYQIEKV-EDPKALF 188
           FS+ K S+IF A +     VAQ+ Q+E V   PK  F
Sbjct: 3   FSVTKFSLIFVALLLAEALVAQSSQLESVTRKPKPFF 39


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 303 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 196
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 303 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 196
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 744 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 778


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 303 KQLITILFHNSCSHFPNFNLFFHLVLQKVLISRKLV 196
           +++I  LFH   +H  N  + +H V  K +++ K+V
Sbjct: 697 QEVINELFHTERTHVRNLKILYH-VFYKPIVTSKIV 731


>U88165-6|AAK21396.2|  214|Caenorhabditis elegans Hypothetical
           protein F54C1.8 protein.
          Length = 214

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 351 NCIYYTIIVKLIINMYKQLITI 286
           NC++Y  IV L++ ++K ++ I
Sbjct: 148 NCVFYLFIVALVVTLWKIVLGI 169


>Z81528-5|CAB04287.1|  698|Caenorhabditis elegans Hypothetical
           protein F35E2.6 protein.
          Length = 698

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 116 CTKYYRGFNDRKEKAHSIYIF 54
           C  YY+ F DR +K    Y+F
Sbjct: 517 CINYYKSFRDRVKKEKPDYLF 537


>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 108 FGAGVYTGVYVAQNYQIEKVEDPKAL 185
           FGA     V+    Y +EK+EDP  L
Sbjct: 259 FGARKNFNVHHTMKYYVEKIEDPSKL 284


>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 108 FGAGVYTGVYVAQNYQIEKVEDPKALFE 191
           FG  + T     + YQ+E VE+ KALF+
Sbjct: 224 FGWELNTEAETMRQYQLEPVEEGKALFK 251


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,081,565
Number of Sequences: 27780
Number of extensions: 95810
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)