Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c16
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 30 0.081
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 27 0.99
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 25 2.3
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 2.3
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 3.0
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 4.0
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|... 24 5.3
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.3
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 5.3
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 24 7.0
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 24 7.0
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 23 9.2
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 30.3 bits (65), Expect = 0.081
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 151 NREQLLTKHSVLKYGISKINEHEIYILC 234
N+E LL HS L IS+INE EI+ +C
Sbjct: 331 NQEVLLNAHSYL-LNISRINEREIFKIC 357
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 0.99
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 285 ISNNTNYIMFCGAVHSF 235
I NNTN+I F G H F
Sbjct: 223 IDNNTNFIHFSGTYHDF 239
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 2.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 330 FFLGN*NYNHKIVEKISNNTNYIMFCGAVHSFTQNVNFMFIYL 202
F++ N + VE+I + NY A H+ + F+F+YL
Sbjct: 53 FYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIFLYL 95
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 327 FLGN*NYNHKIVEKISNNTNYIMFCGA 247
F+GN ++ IV +S N++ +MF GA
Sbjct: 364 FMGNFEGHNAIVNTLSINSDNVMFSGA 390
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 206 ILDIPYLRTECFVNNCSRLTSTVNE 132
+ D YLR +CF+ +C + T +E
Sbjct: 352 VSDKEYLRIQCFIQSCLQYRLTQDE 376
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 24.6 bits (51), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 20 NFTTRRDSSLMAASQEVLPPVISQII 97
NF T S ++A S +LP +I QII
Sbjct: 539 NFNTVISSFIIANSLGILPEIIEQII 564
>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 24.2 bits (50), Expect = 5.3
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 324 LGN*NYNHKIVEKISNNTNYIMFCGAVH--SFTQNVNFMF 211
LGN NH + ++ +T+Y + C + FT + +F
Sbjct: 305 LGNFTENHDVPRFLNRSTDYSLLCNTLTLLLFTDGIPIIF 344
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.2 bits (50), Expect = 5.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 236 LHKM*ISCSFILDIPYLRTECFVNNCSRLTST 141
L K+ S F+L++ +L T N+ LTST
Sbjct: 748 LFKLIHSKPFLLEVGFLETGFLANDLENLTST 779
>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 24.2 bits (50), Expect = 5.3
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = -2
Query: 268 LHNVLRCGTQFYTKCKFHVHL 206
LHN+ + +KC +H H+
Sbjct: 63 LHNICLASFLYLSKCYYHTHI 83
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 23.8 bits (49), Expect = 7.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -3
Query: 105 RKIIICEITGGRTSCEAAI 49
R++ +CE+ GGR+ A +
Sbjct: 749 RRVFVCEVQGGRSGYIATV 767
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 23.8 bits (49), Expect = 7.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 114 NQNRKIIICEITGGRTSCEAAIREESRRVVKLPS 13
N+NR+ C G + E+A+ + V LPS
Sbjct: 282 NRNRRERPCRSNGSSPTSESALNSPASSVSSLPS 315
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 23.4 bits (48), Expect = 9.2
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 94 YNFAVLIFITPCYSFTVEVNREQLLTKHSVL 186
++ +VL+F+ C S E+N + + ++S L
Sbjct: 1160 FSSSVLLFVRSCNSLQAEMNSYERVLEYSKL 1190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,303,095
Number of Sequences: 5004
Number of extensions: 23575
Number of successful extensions: 67
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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