Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c16
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0660 + 5585172-5585356,5585717-5585761,5586942-5587026,558...    27   2.8  
11_05_0079 + 18914668-18914753,18915123-18915338,18915829-189158...    27   2.8  
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036...    26   8.5  

>12_01_0660 +
           5585172-5585356,5585717-5585761,5586942-5587026,
           5587666-5587730,5587887-5587986,5588209-5588250,
           5588400-5588441,5588659-5588952
          Length = 285

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 46  SNGRLTRGPTTSNFANYNFAVLIFITPCYSFTVE 147
           S GRL      +N+   +++VLIF+  C   T++
Sbjct: 50  SRGRLYEYSNNNNYLKKDYSVLIFLVLCVKATID 83


>11_05_0079 +
           18914668-18914753,18915123-18915338,18915829-18915895,
           18916656-18916723,18916999-18917125,18918240-18918339,
           18918405-18918433,18918678-18918730,18919246-18919732
          Length = 410

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -3

Query: 303 HKIVEKISNNTNYIMFCGAVHSFTQNVNFMFIYLRYSIFK 184
           H++   +  N + +MFC   H +  +  F  +  R +IF+
Sbjct: 214 HEVAVVVDANPDILMFCEIDHQYVLDTFFFLVKQRKAIFR 253


>01_06_0986 -
           33602714-33602741,33603037-33603146,33603401-33603601,
           33604605-33604697,33604937-33605182,33606007-33606372,
           33606459-33606599,33607170-33607526
          Length = 513

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 126 WCNKNQNRKIIICEITG 76
           WCNK+ + K+  C+I G
Sbjct: 488 WCNKDDSVKLPFCQIKG 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,728,275
Number of Sequences: 37544
Number of extensions: 126633
Number of successful extensions: 219
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)