Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c16
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-4|CAB05758.1|  298|Caenorhabditis elegans Hypothetical pr...    29   0.81 
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    26   5.7  
AF016418-5|AAK18900.1|  278|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    25   10.0 
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    25   10.0 
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.      25   10.0 

>Z83233-4|CAB05758.1|  298|Caenorhabditis elegans Hypothetical
           protein K06B4.4 protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 276 NTNYIMFCG---AVHSFTQNVNFMFIYLRYSIFKNRMF 172
           N  +  FCG   A+   T  + + +IYLR  +  NR F
Sbjct: 207 NKRWFSFCGILGAIRLVTSTIFYFYIYLRLKVEDNRQF 244


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
            protein Y37B11A.2 protein.
          Length = 1133

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 197  IPYLRTECFVNNCSRLTST 141
            +P+   +CFV++CSR+  T
Sbjct: 1034 LPFAAEQCFVSDCSRIGKT 1052


>AF016418-5|AAK18900.1|  278|Caenorhabditis elegans Hypothetical
           protein C49G7.5 protein.
          Length = 278

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 118 ITPCYSFTVEVNREQLLTKHSVLKYGISKINEHEIYILCKTV-YRTAKHYVVSVVANFFH 294
           +TP   +T+   +      +  + YG+ +  ++   ++ + V  R+  HY +  + N++ 
Sbjct: 68  LTPFVKYTLNKKKRWEAEGNPDILYGLQRSYQNMGVMVAERVSLRSTPHYCIVSINNYYR 127

Query: 295 NF 300
           NF
Sbjct: 128 NF 129


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96   IICEITGGRTSCEAAIREESRRVVKLPSTA 7
            I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 2342 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 2371


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96   IICEITGGRTSCEAAIREESRRVVKLPSTA 7
            I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 2342 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 2371


>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
           protein W02B9.1a protein.
          Length = 1223

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96  IICEITGGRTSCEAAIREESRRVVKLPSTA 7
           I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 645 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 674


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96   IICEITGGRTSCEAAIREESRRVVKLPSTA 7
            I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 2342 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 2371


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96   IICEITGGRTSCEAAIREESRRVVKLPSTA 7
            I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 2342 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 2371


>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
          Length = 1223

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 96  IICEITGGRTSCEAAIREESRRVVKLPSTA 7
           I  ++ GGR S E ++  +SR  +++ STA
Sbjct: 645 IFIQLRGGRISLEVSMNGQSRSSLEVASTA 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,253,949
Number of Sequences: 27780
Number of extensions: 132413
Number of successful extensions: 305
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)