Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c15
         (292 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical pr...    29   0.56 
Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical p...    28   0.97 
Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical pr...    28   0.97 
Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical p...    28   0.97 
Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical p...    28   0.97 
AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C...    28   0.97 
AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B...    28   0.97 
AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A...    28   0.97 
AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.     28   0.97 
AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical ...    26   5.2  
AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical...    25   9.1  

>U39651-7|AAA80398.2|  494|Caenorhabditis elegans Hypothetical
           protein ZK470.1 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 280 LSAQNSLLCTNNFILNHMLCTNI 212
           L +Q  L+C  NF+  H+L TN+
Sbjct: 22  LGSQYMLICVRNFLARHLLLTNV 44


>Z69664-10|CAC42313.1| 1311|Caenorhabditis elegans Hypothetical
            protein T14G10.2b protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>Z69664-9|CAA93519.2| 1470|Caenorhabditis elegans Hypothetical protein
            T14G10.2a protein.
          Length = 1470

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>Z68880-11|CAC42342.1| 1311|Caenorhabditis elegans Hypothetical
            protein T14G10.2b protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>Z68880-10|CAA93100.2| 1470|Caenorhabditis elegans Hypothetical
            protein T14G10.2a protein.
          Length = 1470

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>AF308449-1|AAL09435.1| 1347|Caenorhabditis elegans PXF isoform C
            protein.
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 990  NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1039


>AF308448-1|AAL09434.1| 1311|Caenorhabditis elegans PXF isoform B
            protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>AF308447-1|AAL09433.1| 1470|Caenorhabditis elegans PXF isoform A
            protein.
          Length = 1470

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>AF170796-1|AAF22963.1| 1470|Caenorhabditis elegans RA-GEF protein.
          Length = 1470

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 89   NEFXTLKVNTCKPNXY*LSSNPQKKVVY*YKFHLKLRNTESYIST*HMVQNEI 247
            N F    V T +       + P+KKV   Y+  L +R  +SY+   H+V NE+
Sbjct: 1113 NSFENSNVATMRKGMSGKQNQPRKKV---YEQALMVRKVKSYLEGLHVVDNEM 1162


>AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical
           protein C13A2.5 protein.
          Length = 485

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 288 FFIYLLKTLYFVLIIS 241
           +F++LL TL F+LIIS
Sbjct: 39  YFLFLLMTLLFILIIS 54


>AF022967-11|AAB69874.1|  192|Caenorhabditis elegans Hypothetical
           protein C13A2.2 protein.
          Length = 192

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 18  IIIEXNNLTKLXVKCNFTKSERSETNSLRLK*ILANLMXINC 143
           I+    N+ +  V C +    R E ++     I+A +  INC
Sbjct: 94  IVTTSENIDRKSVNCRYYDCNRQEISNSAFNTIVAPMAVINC 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,512,512
Number of Sequences: 27780
Number of extensions: 61889
Number of successful extensions: 110
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)