Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c12
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0130 - 10474607-10475994,10479609-10479706,10479878-104800...    29   4.9  
03_02_0804 + 11374219-11374221,11374326-11374473,11374556-113746...    28   6.4  
11_03_0132 - 10505910-10505996,10507419-10507499,10509582-105105...    28   8.5  

>11_03_0130 -
           10474607-10475994,10479609-10479706,10479878-10480047,
           10480382-10480465,10481359-10482009,10482016-10482084
          Length = 819

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 270 LLFASERPSIRLPQKWLPRVATVPNLTKTPLRTSPCS 380
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 607 VLFGDHNPSGRLPVTWYPEEFTKVPMTDMRMRADPAT 643


>03_02_0804 +
           11374219-11374221,11374326-11374473,11374556-11374629,
           11374736-11375233,11375749-11376093,11376178-11376390,
           11376669-11377457,11377686-11377769
          Length = 717

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -1

Query: 343 FGTVATLGSHFCGSRIEGRSDANKSNQYT----KYYRVTPGFS 227
           FGT +++GS    +RIE  + +N S+QY      YY  T G++
Sbjct: 5   FGTSSSMGSASHPARIEYNTSSNVSSQYIYEQGLYYPATNGYA 47


>11_03_0132 -
           10505910-10505996,10507419-10507499,10509582-10510528,
           10510645-10510742,10511273-10511442,10511551-10511832,
           10514544-10514936
          Length = 685

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 270 LLFASERPSIRLPQKWLPRVATVPNLTKTPLRTSPCS 380
           +LF    PS RLP  W P   T   +T   +R  P +
Sbjct: 563 VLFGDHNPSGRLPVTWYPEEFTRIPMTDMRMRADPAT 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,985,772
Number of Sequences: 37544
Number of extensions: 296557
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)