Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c11
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    29   0.71 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   0.94 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.0  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   5.0  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    25   6.6  

>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 0.71
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 431 CSQLRPLETELAPIGPIAPPMFPFIVCTGRV 339
           C +LRP    + P+ P+  P+   IVC G V
Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVV 168


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 130 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSAL 258
           L ++CY  SV   T    N  W+   +   Y  +TAI  Q A+
Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQLAI 421


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 89   FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 193
            FSS+N    ++SS   I  TV+QF ++   + ++S
Sbjct: 979  FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 601 PLLQTVGRARSCSDLWLVAEEPVH 530
           PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 565 YKTELCRPFEEAGVCKY 615
           YKTE C+ ++ +G C+Y
Sbjct: 327 YKTEPCKNWQISGTCRY 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,402,086
Number of Sequences: 5004
Number of extensions: 44636
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)