Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c11
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 385 QLHRLCSHSSSALVEFDCLFRLHF-VANTTVR 293
           +LHR   HS S+L +   +  LH  + N  +R
Sbjct: 130 ELHRAACHSGSSLTKSRLMRCLHHDIENAHIR 161


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 11  TKKQRPQ*LNYKIARILETSSKVFVNFSSANLKFTVSSST 130
           +KK R +    +IAR ++ +SK+F    S  +K TV  +T
Sbjct: 437 SKKPRRKFHFKQIARAVKFTSKLFGRALSRRIKATVLFAT 476



 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 524 PPVNRLLRHQPQVATRPSSADRL 592
           PP   LLR+   +AT P    +L
Sbjct: 827 PPTPNLLRYFASIATNPKEQAQL 849


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 534 TGSSATSHKSLQDR 575
           T +S T+HKSLQ R
Sbjct: 47  TKNSLTTHKSLQHR 60


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 558 CGWWRRSRFTGG 523
           CGW   SR  GG
Sbjct: 153 CGWKNPSRIVGG 164


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,073
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)