Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c10
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    29   0.46 
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   4.3  
SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    26   4.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   9.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.9  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   9.9  

>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 18/60 (30%), Positives = 25/60 (41%)
 Frame = +3

Query: 486 KIENWTWDLDLEKEKFLTLEGQDEMIILAERTRKRFPGAVKEKYNNQTILFRYTAHKEHN 665
           KI +W  + DL+ +K L  E    +    E  RKR      +  NN T   R T  +  N
Sbjct: 86  KIPDWVLEQDLKIQKDLVKETHARLEQRLEEIRKRNQSRKNQMSNNSTTYHRETKRRNIN 145


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 421 NSFNRVFIFVISLALGYLVPCLITIHIFESLQFGYL 314
           N + R F  V S A+ YL+ CL+  H F S++ G L
Sbjct: 336 NLYTRFFKLVQSPAVTYLMACLLESH-FMSIRKGAL 370


>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 648 PCSETGLSDCYIFL*QLPEIVFVFFLLKLSFHLVPLMLGIFL 523
           P  +    D Y F   L  I +++F +   F L+ LM+G+FL
Sbjct: 51  PRIQKNFQDNYRFYGTLLCICWLYFFIWYPFALLALMVGVFL 92


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 13   NFSPASNASIYYPK*YTQ 66
            ++ P SNAS+Y P  Y Q
Sbjct: 1365 SYDPVSNASLYMPSDYNQ 1382


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 35  LQFIILNNTLNICDSL 82
           LQF +LN  +++CDSL
Sbjct: 538 LQFDVLNELISLCDSL 553


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 249 IQNHLGSRTPYRLKGNKNDSQIKYPNCKDSKIWMVIR 359
           +QN   S    +LKG+K  ++    NC+DS  ++  R
Sbjct: 166 VQNDGASAIKLKLKGSKVITESSETNCRDSIYYIPAR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,387
Number of Sequences: 5004
Number of extensions: 51856
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)