Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c08
         (533 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   1.3  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   1.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   5.2  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 296 RAYGRSQWDLWIMEDQV*PHLQEPTQCSAFFGNST 192
           + Y R+ WD +    Q   ++ E +  S +F N T
Sbjct: 541 QTYLRTAWDKFTNMQQQFAYIDESSNSSNYFANKT 575


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 101 SIRFSGHVPYGFQRFGESSKKLT--NSALCDFSSNYRR 208
           ++++  H+ YG+    E + KLT  N        NYR+
Sbjct: 51  ALQYCTHLIYGYAAIDEETYKLTPLNEQFDVIKDNYRK 88


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 323 HVPGCVFRFGKTYGNDTRDAKRWLRGD 403
           H+PGC   +GKT  +  +   RW  G+
Sbjct: 318 HIPGCGKVYGKT--SHLKAHLRWHTGE 342


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 146 GESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVKPDPPLSINPTEIY 286
           G+ +   T+  L   +S+     STE A  N        S NP +IY
Sbjct: 155 GKPATSTTSQNLSSPASSTSSTSSTEKAGTNNNNSKSSQSSNPPQIY 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,741
Number of Sequences: 336
Number of extensions: 2565
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)