Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c08
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    30   0.25 
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   4.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   4.1  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   5.4  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   5.4  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    25   5.4  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   9.4  

>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 204 EEGRALSGLL*MWSNLILHYP*IPLRSTISTSVCCPTTQVTCQAASSDSEKPTATTRETL 383
           +EGRAL+     + N  + Y  IP+R   S S  C       QA     +  T+T++  L
Sbjct: 333 QEGRALNVSDCNFGNEEIAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAEL 392

Query: 384 SVGSEETSHL 413
           S    +  H+
Sbjct: 393 STPPSKRRHI 402


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 173 SALCDFSSNYRRRQST---EWAPVNVVKPDPPLSINPTEIYHKHVGMLPNYAG 322
           +A+ + SS+ RRRQST   + APV++ K      +N    + ++  +  +  G
Sbjct: 591 NAMAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLNGLGYHSRNTSIASDIDG 643


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 426 IPFF*DVKSPRSQRLAS-LVSLP*VFPNLKTQPGT*PA*LGN 304
           I  F  V S  ++RLA+ L S+P  +PN    PGT P  L N
Sbjct: 323 IELFVAVHSGFTERLANRLYSMPHEYPNFSLAPGT-PESLSN 363


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 412 RCEVSSEPTLSVSRVVAVGFSESEDAAWHVTCVVGQH 302
           RCE++    ++ S      F  SE+++WH + V+  H
Sbjct: 476 RCEMTDSIIIASSNETIKFFDLSEESSWHNSRVLTWH 512


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
 Frame = -2

Query: 313 VGQHTDVLMVDLSGIYG*WRIRFDHIYRSPLSALP------SSVIRRKVAES*IS-ELFR 155
           + Q+  +L + L  +Y       D   R PLS  P      S+V   K AE+  S + FR
Sbjct: 561 LSQYIYLLRIALVRLYTILMENNDSSQRKPLSVDPKQENVSSTVETAKQAETTASSDSFR 620

Query: 154 RLAETLKAVRHMTRKPDR 101
           + A TL  +RH+    +R
Sbjct: 621 KYANTLNDLRHLKSSRNR 638


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 146 RNVESRTAHDPKTGSILRD*SPISDS*RTMNEF*RRTLVQ 27
           +N +S T   PK  S +++   ISDS +T+ +  +R LV+
Sbjct: 127 KNTDSITDETPKVLSEIKEHGTISDS-KTLTDLKKRKLVE 165


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = -1

Query: 284 RSQWDLWIMEDQV*PHLQEPTQCSAFFGNSTKSRRELN**AFSTTRRNVESRTAHD 117
           ++ WD W+ +D++    +E  +      N+  S R+       T++++  S + HD
Sbjct: 44  KNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQK-----PTSKKSASSTSKHD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,785
Number of Sequences: 5004
Number of extensions: 44386
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)