Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c08
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       28   5.4  
10_01_0113 + 1410151-1411416                                           28   5.4  
02_01_0210 + 1402037-1402066,1402449-1402544,1402611-1403033,140...    28   5.4  
03_02_0098 + 5608787-5610812,5610956-5611053                           27   7.2  
09_03_0089 + 12265916-12267232                                         27   9.5  
09_03_0056 - 11936264-11939677                                         27   9.5  
08_02_0944 + 22868885-22870387                                         27   9.5  
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009...    27   9.5  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 264 P*IPLRSTISTSVC-CPTTQVTCQAASSDSEKPTATTRETLSVGSEETS 407
           P  P  S +S+S    P+T  TC+ +++  + P+ T    LS  + +TS
Sbjct: 541 PSTPRTSLLSSSTSKIPSTPSTCELSTATGKIPSTTCTSPLSTATGKTS 589


>10_01_0113 + 1410151-1411416
          Length = 421

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 248 PDPPLSINPTEIYHKHVGMLPNYAGH---VPGCVFRFGKTYGNDTRDAKRWLR 397
           PD P  +  T    KHVG+   Y G+   V   V R G   G D  +A R +R
Sbjct: 266 PDAPTVLAITVNSRKHVGVKDGYYGNCATVHMAVARSGAVAGGDMTEAVRAIR 318


>02_01_0210 +
           1402037-1402066,1402449-1402544,1402611-1403033,
           1403126-1403215,1403330-1403401,1403851-1403980,
           1404172-1404269
          Length = 312

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 439 IYDVNSFLLRCEVSSEPTLSVSRVVA 362
           + DVN  + RC  S+ PT SVS+ +A
Sbjct: 147 LQDVNDAMSRCAASTAPTTSVSQKLA 172


>03_02_0098 + 5608787-5610812,5610956-5611053
          Length = 707

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 234 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 145
           +G H  LC ++  D + +RA L +FF + P
Sbjct: 44  SGCHCFLCAIKEPDARLRRASLAAFFRELP 73


>09_03_0089 + 12265916-12267232
          Length = 438

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 256 RIRFDHIYRSPLSALPSS 203
           R RFDH++ SP SAL S+
Sbjct: 185 RTRFDHLFPSPASALRSA 202


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 256 RIRFDHIYRSPLSALPSS 203
           R RFDH++ SP SAL S+
Sbjct: 91  RTRFDHLFPSPASALRSA 108


>08_02_0944 + 22868885-22870387
          Length = 500

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 296 VGMLPNYAGHVPGCVFRFGKTYG 364
           VG L N  GH+P  + R  +TYG
Sbjct: 44  VGNLLNLRGHLPPALARLARTYG 66


>05_04_0309 -
           20100231-20100307,20100362-20100503,20100588-20100967,
           20101049-20101076,20101182-20101306,20101402-20101457,
           20101709-20101791,20101881-20101949,20102050-20102640
          Length = 516

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 150 SRRKSSLIQLSATFRRITEEGRALSGL 230
           S R+  L+QLS +  + TE GRA++GL
Sbjct: 205 SLRRLQLMQLSVSTLKATEIGRAVNGL 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,435
Number of Sequences: 37544
Number of extensions: 276303
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)