Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c08
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    27   0.12 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 306 CPTTQVTCQAASSDSEKPTATTRETLSVGSEETSHLRR 419
           C T  VTC   S ++E P++T++++  V S + S + R
Sbjct: 261 CVTNSVTCDRPSDEAE-PSSTSKKSGIVRSHQQSCINR 297


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 149 RRNVESRTAHDPKTGSILRD*SPISDS*RTMNE 51
           RRN+ S + HD K   +  + S I    RT  E
Sbjct: 2   RRNISSYSHHDEKFKQLRNEDSEIDLRSRTKEE 34


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +2

Query: 152 SSKKLTNSALCDFSSNYRRRQSTEWAPVN 238
           +S ++ N+   +  SNYR  +  +  P N
Sbjct: 380 ASSRMENNLRGETQSNYREMEKRQSVPAN 408


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +2

Query: 104 IRFSGHVPYGFQRFGESSKKLTNSALCDFSSNYRRRQSTEWAPVNVVK 247
           +R++      F++F  +S   +   +C    +Y  R    W+  +V+K
Sbjct: 802 VRWTAPEAIAFRKFTSASDVWSMGIVCWEVMSYGERPYWNWSNQDVIK 849


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,894
Number of Sequences: 438
Number of extensions: 2698
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)