Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c04
(440 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.08c |cox12||cytochrome c oxidase subunit VIb|Schizosacc... 97 1e-21
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 0.55
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 3.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 3.9
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 25 5.2
SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
>SPCC1442.08c |cox12||cytochrome c oxidase subunit
VIb|Schizosaccharomyces pombe|chr 3|||Manual
Length = 83
Score = 97.1 bits (231), Expect = 1e-21
Identities = 37/64 (57%), Positives = 46/64 (71%)
Frame = +3
Query: 144 RFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTF 323
RFPN NQT+HC+QSY+D+ RC K +GE + PC F Y+SLCP EWV++WD QR GTF
Sbjct: 20 RFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTF 79
Query: 324 AGRI 335
I
Sbjct: 80 PAPI 83
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.3 bits (60), Expect = 0.55
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 172 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
T++ V TST A NT+ + S S P++ ST TS P S V
Sbjct: 2353 TSSTVVNTSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2405
Score = 27.5 bits (58), Expect = 0.97
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 172 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 1117 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 1169
Score = 27.5 bits (58), Expect = 0.97
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +1
Query: 172 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
T++ V TST A NT+ S S P++ ST TS P S V
Sbjct: 2761 TSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 2813
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 172 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
T++ V TST NT+ S S P++ ST TS P S V
Sbjct: 1177 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1229
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +1
Query: 172 TATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
T++ V TST NT+ S S P++ ST TS P S V
Sbjct: 1489 TSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSV 1541
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 25.8 bits (54), Expect = 3.0
Identities = 12/53 (22%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 105 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRG-EKYEPCYYFKRVY 260
++ ++ +++ DP P + + +C +Y + +K+RG +KY+P + +Y
Sbjct: 183 ETQSEKRSSQTDPSLPFKTNSLNCDVTYEEGPLTKKLRGPKKYKPSHSSWDIY 235
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 25.4 bits (53), Expect = 3.9
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = +1
Query: 130 HLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNT-NHATISRECTGLSAPMSG--STSGT 300
H ST + T T T T T T R A NT N +T + G SA S T
Sbjct: 141 HSSTTANRTTSTPTTTTART-TRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAG 199
Query: 301 TSAPKAPSPV 330
T A SPV
Sbjct: 200 TGASHRSSPV 209
>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -1
Query: 215 NFLATVEVHVTLVAVPRLILVREPWVERCCFEVGGRFDHLRHIAYYYLAVSWI 57
N+ +H+ L+A RLI P V R E+ +L ++A ++ W+
Sbjct: 40 NYKGAWVIHIVLIAALRLIFHAIPSVSR---ELAWTLTNLTYMAGSFIMFHWV 89
>SPAC806.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 72
Score = 24.6 bits (51), Expect = 6.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 300 CPTCRPTHWGRETCTL 253
CPT PT W +CT+
Sbjct: 3 CPTHGPTTWNPHSCTV 18
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 6.8
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +1
Query: 103 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMS 282
S+ P ++ +S+ S + T + + +S+ + ++ ++ +TIS + S+P S
Sbjct: 297 SSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS-SSPTSSSSTIS---SSSSSPSS 352
Query: 283 GSTSGTTSAPKAPS 324
S S TTS+ K+ S
Sbjct: 353 SSFSSTTSSSKSSS 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,839,964
Number of Sequences: 5004
Number of extensions: 37920
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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