Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c04
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0210 + 15470680-15470715,15473088-15473342,15473417-154734... 97 4e-21
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 97 6e-21
04_04_0390 - 24882572-24882577,24882928-24883009,24883089-248832... 79 2e-15
02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911 58 2e-09
02_05_0546 + 29889861-29890182,29891057-29892798 31 0.31
09_06_0272 - 21962495-21962524,21962742-21962918 31 0.54
05_05_0223 - 23406814-23407477,23407597-23407919 31 0.54
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 0.72
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535... 29 1.7
04_04_0692 - 27307349-27307728,27308381-27308546 29 1.7
04_04_0293 - 24189344-24189350,24189804-24190026,24190411-241905... 29 2.2
04_02_0017 - 8572400-8572732,8572818-8572919,8573138-8573230,857... 28 3.8
06_01_0772 + 5770502-5770619,5771035-5772335 27 5.1
09_04_0320 - 16656620-16657243,16658198-16659106 27 6.7
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241... 27 6.7
12_01_0314 - 2395113-2395760,2396151-2396738,2397218-2397252,239... 27 8.8
08_02_0703 - 20188489-20190246 27 8.8
06_01_0580 + 4148969-4149101,4149394-4149546,4149682-4150095,415... 27 8.8
04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781... 27 8.8
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575... 27 8.8
>03_03_0210 +
15470680-15470715,15473088-15473342,15473417-15473499,
15473617-15473698,15474886-15474939
Length = 169
Score = 97.5 bits (232), Expect = 4e-21
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +3
Query: 105 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 284
K ++TAP D RFP NQTRHC+ YV++HRC +GE C F + YRSLCP EW
Sbjct: 93 KPEIKIETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGEDAPECDKFAKYYRSLCPGEW 152
Query: 285 VDKWDNQRAEGTFAG 329
V++W+ QR GTF G
Sbjct: 153 VERWNEQRENGTFPG 167
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 97.1 bits (231), Expect = 6e-21
Identities = 37/75 (49%), Positives = 50/75 (66%)
Frame = +3
Query: 105 KSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 284
K ++TAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP+EW
Sbjct: 179 KPEIKIETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECEKFAKYYRSLCPSEW 238
Query: 285 VDKWDNQRAEGTFAG 329
+++W+ QR GTF G
Sbjct: 239 IERWNEQRENGTFPG 253
>04_04_0390 -
24882572-24882577,24882928-24883009,24883089-24883200,
24883411-24883441
Length = 76
Score = 78.6 bits (185), Expect = 2e-15
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = +3
Query: 117 DLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGEKYEPCYYFKRVYRSLCPNEW 284
++KTAP D RFP NQTRHC+ Y+++HRC +GE C F + YRSLCP EW
Sbjct: 20 EIKTAPADFRFPTTNQTRHCFTRYIEYHRCVNAKGEATADCEKFAKYYRSLCPAEW 75
>02_05_1031 - 33626527-33626580,33627482-33627563,33628892-33628911
Length = 51
Score = 58.4 bits (135), Expect = 2e-09
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +3
Query: 204 CQKVRGEKYEPCYYFKRVYRSLCPNEWVDKWDNQRAEGTFAG 329
C + +GE + C + + YRSLCP EW+++W QRA GTFAG
Sbjct: 8 CIEAKGEGSDECTKYAKCYRSLCPGEWIERWKEQRANGTFAG 49
>02_05_0546 + 29889861-29890182,29891057-29892798
Length = 687
Score = 31.5 bits (68), Expect = 0.31
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +1
Query: 106 NRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSG 285
N PP + +T+G+L K T + + + AKN + T S + T P++G
Sbjct: 98 NGPPNLVRTGATYGNLNKSFHDTCARSNLNAVQSSNPVAKNQDTKTASIDATA-GNPLTG 156
Query: 286 STSGTTSAPKAPSP 327
+ + AP P P
Sbjct: 157 HHATPSVAPVPPKP 170
>09_06_0272 - 21962495-21962524,21962742-21962918
Length = 68
Score = 30.7 bits (66), Expect = 0.54
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 342 GSKSYRRRCLRRAGCPTCRPTHWGRET 262
G +R++ G P CRP HW R T
Sbjct: 11 GGGDFRQKVWSMTGGPYCRPVHWRRNT 37
>05_05_0223 - 23406814-23407477,23407597-23407919
Length = 328
Score = 30.7 bits (66), Expect = 0.54
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 214 FAAKNTNHATISRECTGLSAPMSGSTSGTTSAPKAPS 324
FA+ N A++S C+G A + TS +S P+AP+
Sbjct: 219 FASSNGGDASVSWPCSGDDAQNNSETSHESSPPEAPA 255
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 30.3 bits (65), Expect = 0.72
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = +1
Query: 121 SKQHLSTHGSLT-KIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSG 297
+K HLS G+ + +G AT + T + +K+ + T+ + GLS MSG+
Sbjct: 314 NKYHLSLPGNQKGNLGQGLATSLGQTQ-MQQKWIHEETDDLSTILSGNGLSNGMSGTLQS 372
Query: 298 TTSAPKAP 321
TS+P P
Sbjct: 373 VTSSPLLP 380
>06_01_0728 -
5356400-5356676,5356888-5357090,5357181-5357474,
5357940-5358063,5358157-5359496
Length = 745
Score = 29.1 bits (62), Expect = 1.7
Identities = 22/81 (27%), Positives = 31/81 (38%)
Frame = +1
Query: 112 PPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGST 291
PP S L SLTK + S+ A A+ ++HA+ + A +G
Sbjct: 76 PPASAALLRRRSSLTKPKSRFVEPAAPPSSAAAAAASSTSSHASPAH-----PAAAAGGG 130
Query: 292 SGTTSAPKAPSPVGFRS*TFP 354
SG S P P+ FP
Sbjct: 131 SGAASTPHTPAEADDEEEVFP 151
>04_04_0692 - 27307349-27307728,27308381-27308546
Length = 181
Score = 29.1 bits (62), Expect = 1.7
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +1
Query: 136 STHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTSGTTSAPK 315
S L + GT T VT T + R F +T H + T A +SGS +G T K
Sbjct: 78 SAANPLRSYKDGT-TIVTLTRSGTRYFICGSTGHCGAGMKLTVTVATLSGSAAGGTRLAK 136
Query: 316 APS 324
S
Sbjct: 137 PSS 139
>04_04_0293 -
24189344-24189350,24189804-24190026,24190411-24190529,
24191331-24191578
Length = 198
Score = 28.7 bits (61), Expect = 2.2
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +1
Query: 169 GTATKVTWTSTVARKFAA------KNTNHATISRECTGLSAPMSGSTSGTTSAPKAPSPV 330
G A K T + ARK A K T A + + T +AP S + S +P+APSPV
Sbjct: 17 GPAPKATAPAGPARKAPAAAGPAPKATAPAGPAPKATATAAPSSKAPSPAAPSPEAPSPV 76
>04_02_0017 -
8572400-8572732,8572818-8572919,8573138-8573230,
8573391-8573519,8573781-8574025,8574184-8574453,
8574590-8574752,8575965-8576063
Length = 477
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 390 DLIKTNRNKLKHWERLGSKSYR 325
+L KTNR+K+K+ GS+SY+
Sbjct: 306 ELNKTNRSKVKYHHTTGSRSYK 327
>06_01_0772 + 5770502-5770619,5771035-5772335
Length = 472
Score = 27.5 bits (58), Expect = 5.1
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +3
Query: 45 SIEINPRNG*IIISNMPEMIKSPADLKTAPFDPRFPNQNQTRHCYQSYVDFHRCQKVRGE 224
++E+ NG ++++ EMI +T+ + F ++T S + +HR + R E
Sbjct: 316 TMEMLIANGQRLVTSSSEMIVDSGAQRTSLWPSTFALLDKTITQAMSSIGYHRTSRARQE 375
Query: 225 KYEPCYYFKRVY 260
Y CY + Y
Sbjct: 376 SY-ICYLSEHDY 386
>09_04_0320 - 16656620-16657243,16658198-16659106
Length = 510
Score = 27.1 bits (57), Expect = 6.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 142 HGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISR 252
HG + ++ GTAT V +S A + A + +H +R
Sbjct: 68 HGPVMSLKLGTATAVVASSAAAARDALQRYDHVLAAR 104
>02_05_0783 +
31723330-31723585,31723683-31723857,31723953-31724166,
31724388-31725032,31725199-31725335,31725440-31725554
Length = 513
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +1
Query: 226 NTNHATISRECTGLSAPMSGSTSGTTSA 309
NTN +T+S E T S S S S TTSA
Sbjct: 181 NTNLSTVSNESTTKSILSSVSVSDTTSA 208
>12_01_0314 -
2395113-2395760,2396151-2396738,2397218-2397252,
2397546-2397632,2397913-2397985,2398648-2398714,
2398795-2398931,2400196-2400217,2400733-2400807,
2402281-2402365,2402605-2403334
Length = 848
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 339 SKSYRRRCLRRAGCPTCRPTHWGRETCTLS*NSSMVRIFRRELSGNGG 196
S+ RRR LRRA C CR R + T + M R +RR G+ G
Sbjct: 113 SQRQRRRLLRRAVCAVCR-----RSSTTATRCERMTR-WRRGWKGSNG 154
>08_02_0703 - 20188489-20190246
Length = 585
Score = 26.6 bits (56), Expect = 8.8
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Frame = +1
Query: 91 CLR*SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLS 270
C R PP + + R T+TVA A+++++ + S + S
Sbjct: 112 CARHGRAPPAPPS--AAEAREAALLRAVPAAAARTTTVAAMVPARSSSNLSCSSRASAAS 169
Query: 271 APMSGSTS--GTTSAPKA 318
SGS+S T P+A
Sbjct: 170 TSSSGSSSEMATVEVPRA 187
>06_01_0580 +
4148969-4149101,4149394-4149546,4149682-4150095,
4150218-4150294,4151479-4152699,4153057-4153128
Length = 689
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 139 THGS---LTKIRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGST 291
THG+ L K R + W V RKF + N+ S+EC + P S T
Sbjct: 111 THGACDYLLKPVRIEELRNIWQHVVRRKFGNRERNNLDFSKEC---NKPQSADT 161
>04_04_0848 -
28677545-28677635,28677760-28677887,28678020-28678126,
28678242-28678320,28678426-28678515,28678603-28678854,
28680351-28680497,28680711-28681035,28681177-28681406
Length = 482
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 103 SNRPPTSKQHLSTHGSLTKIRRGTATKVTWTSTVARKFAAKNTNHAT 243
++ P ++ HG++ K R G + TW + KF+ + N T
Sbjct: 308 TDNPKVVEELKEEHGTILKKREGVNSGFTWEEYRSLKFSTQVMNEIT 354
>03_05_0451 -
24456923-24457069,24457161-24457310,24457408-24457513,
24457715-24458040,24458129-24458263,24458350-24458430,
24458516-24458704,24458794-24458986,24459068-24459174,
24459280-24459354,24459446-24459601,24459745-24459828,
24459933-24460046,24460119-24460214,24460302-24460392,
24460500-24460615,24460878-24461037,24461964-24462217
Length = 859
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 160 IRRGTATKVTWTSTVARKFAAKNTNHATISRECTGLSAPMSGSTS 294
+ + T T V W V K + +S C+G++A G S
Sbjct: 190 LSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVS 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,119,893
Number of Sequences: 37544
Number of extensions: 254033
Number of successful extensions: 782
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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