Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c02
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0177 + 1512181-1512286,1512373-1513280 29 2.3
11_01_0799 + 7035380-7036148,7036587-7037080 29 3.1
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 29 3.1
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474... 29 4.1
05_03_0648 + 16563147-16565557,16565655-16565850 29 4.1
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 4.1
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 4.1
02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,127... 29 4.1
06_03_1282 - 28946363-28946533,28947234-28947272,28947399-289475... 27 9.4
>01_01_0177 + 1512181-1512286,1512373-1513280
Length = 337
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/95 (24%), Positives = 44/95 (46%)
Frame = +3
Query: 132 EAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFV 311
EAK+G E+ ++ V A+L+ + ++A G + + A + N S N
Sbjct: 38 EAKVGFLWELDGASERLQLVKADLMVEG-SFDDAVRGVDGVFHAASPVVVVGNSSSNNGK 96
Query: 312 ENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATP 416
N ++ Q+ L EP++R ++ C +A+P
Sbjct: 97 PNDDDDEEEVQQRLV-EPIVRGASNVLRSCARASP 130
>11_01_0799 + 7035380-7036148,7036587-7037080
Length = 420
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/74 (27%), Positives = 33/74 (44%)
Frame = +3
Query: 78 KTLTMDPIAVLQSRIEQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLH 257
KT+ DP+ SR+ L + P + I +G S A L I N + L
Sbjct: 303 KTILFDPVRRQSSRLRALSTDVAADPRMGIGKPRGKS--AKKLKELAGITNLLSSGSILK 360
Query: 258 EAMQMASELNNYSD 299
E+ AS++++ +D
Sbjct: 361 ES-DFASDVHSETD 373
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/86 (22%), Positives = 41/86 (47%)
Frame = +3
Query: 96 PIAVLQSRIEQLEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMA 275
P+ + + R+E+L +S I + ++ S +++ + A + + + +HE
Sbjct: 2789 PVGLSELRLEELSQTKSVSQSIVANAEE-TSTRSDIETPAMDASESKSPESDVHEL---- 2843
Query: 276 SELNNYSDPNFVENLQKNDLHKQEVL 353
SE + P N + N+LH QE++
Sbjct: 2844 SERVEFMGPTPSANEKSNELHSQELV 2869
>06_03_0541 -
21944696-21944851,21944939-21945142,21945438-21947472,
21947644-21947720,21948289-21948477,21949188-21949448,
21949527-21949632,21951330-21951517,21951814-21951971,
21952015-21952840,21952947-21953210
Length = 1487
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +3
Query: 156 EISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDL 335
E+ +G + D+ +L + A N A E + +E+ N DP FVE L++
Sbjct: 230 ELRGEGMESDNGEPSLTAEINAENMARLAGMSAGEIAEAQAEILNRMDPAFVEMLKRRGK 289
Query: 336 HK 341
K
Sbjct: 290 EK 291
>05_03_0648 + 16563147-16565557,16565655-16565850
Length = 868
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +3
Query: 129 LEAKLGLSPEISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNF 308
LEA + EIS + + D V A L + Q +N E A++ ++++ NF
Sbjct: 152 LEALGYVCEEISPEHLEQDQVNAVLTAVVQGMNQTELSPEVRLAAVKALYNALDFAESNF 211
Query: 309 VENLQKNDLHK 341
+++N + K
Sbjct: 212 ANEMERNYIMK 222
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 156 EISIDGQQGDSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFVENLQKNDL 335
EIS G+ + A L QA+ + A HE L + + S+ V L++++
Sbjct: 78 EISSSGEARRELEARLAEKEQALRHLCAAHEGLRSSARERSDALEAEKRELVAALEESEA 137
Query: 336 HKQEVLAA 359
+ E AA
Sbjct: 138 RRLEQEAA 145
Score = 28.7 bits (61), Expect = 4.1
Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Frame = +3
Query: 183 DSVTANLLSAAQAINNATAGHEKLHEAMQMASELNNYSDPNFV-----ENLQKNDLHKQE 347
D VT NL QA+ EKL +M+ +EL Y D N V + + + +E
Sbjct: 741 DQVTENLHQQMQAVEE----FEKLRVSME--TELGRYMDENSVLKSDLVSALNSKMDAEE 794
Query: 348 VLAAEP-----VIRHHCRCMQQCKQATPVLESEAIQK 443
L E +I CR + + +Q VLE E + K
Sbjct: 795 SLREEKDKLCSIIDERCRNIDELQQHIAVLEEENLDK 831
>02_05_0101 - 25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/69 (23%), Positives = 31/69 (44%)
Frame = +3
Query: 264 MQMASELNNYSDPNFVENLQKNDLHKQEVLAAEPVIRHHCRCMQQCKQATPVLESEAIQK 443
+Q ++ N + N V L LH Q+ L+ +PV+ C + +T + + ++
Sbjct: 1333 LQNLNKKNTFDSHNVV--LADEQLHIQQTLSNKPVVNSQCVPTVEKSSSTSSVSANVLKD 1390
Query: 444 AAQMQPTVD 470
+ Q T D
Sbjct: 1391 PQENQSTTD 1399
>02_01_0190 + 1276808-1278214,1278450-1278743,1278815-1279087,
1279204-1279336,1279425-1279551,1279788-1280284,
1280578-1280642,1280722-1280823,1281020-1281162,
1281761-1281816,1282214-1282869,1282975-1283165,
1283280-1283574,1283738-1283778,1284082-1284104,
1284173-1284369,1284472-1284581,1285309-1285639,
1285968-1286060,1286095-1286166,1286626-1286886
Length = 1788
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +1
Query: 478 TLQLQK*RRKLMQYRMEFSN*PKLADRPPMI 570
T++LQ R+L Y SN PKL DR P+I
Sbjct: 1372 TVELQYSSRELEFYIQRLSNLPKLLDRNPVI 1402
>06_03_1282 -
28946363-28946533,28947234-28947272,28947399-28947566,
28947605-28947697,28948135-28948215,28948409-28948499,
28948657-28948728,28948803-28948903,28949283-28949381,
28949631-28949954
Length = 412
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 458 LHLSSFLYGLRLQNWCCLFTLLHTATVM-SDHWFSC 354
L LS FLY + + +C LFT L A + + W +C
Sbjct: 240 LILSDFLYYAKFKRYCKLFTDLVIALLQPGNEWHNC 275
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,606,686
Number of Sequences: 37544
Number of extensions: 247154
Number of successful extensions: 620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -