Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17c01
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 28 1.3
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 28 1.3
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 2.3
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 3.0
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 27 3.0
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 4.0
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 4.0
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 5.3
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 25 7.0
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 7.0
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.0
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 25 9.3
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 9.3
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 333 LNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMT 467
LN +KK R+ D LL E + F++ W R+ S PL++
Sbjct: 793 LNTFKKIRSSHLDDALLVLPFEHVLSLFRFIDIWASRKWSIPLVS 837
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +3
Query: 18 FDVPHAIVCESNKILKFSVRQIKMLVQTLSTLMYTFVFLSLFLVDYLLGNGFVDMFQTIF 197
+D+ +AI E NK+ + + + K L FL+ + +LL NGFV+ + F
Sbjct: 235 YDIDYAIQMEKNKLFEQATKSPKQ-----EELKQRQEFLNELISSFLLNNGFVETAKK-F 288
Query: 198 C 200
C
Sbjct: 289 C 289
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.3
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Frame = -1
Query: 310 TSISMNMTGMLIGFSLPTNCVFFASSRNVFF-TKQAILQNIVWNISTKPLPNK*STRNKL 134
T I + T L G T + SRNVFF T Q IL +I I + +
Sbjct: 140 TGIPKSQTAELSGHVPVTTRNQYYQSRNVFFVTPQTILNDIKHGICDRTRISCLVIDEAH 199
Query: 133 KKTKVYIKVLNVCTSILIWRTENFKILLLSHT 38
+ T Y V V +L +NF+IL LS T
Sbjct: 200 RSTGNYAYVEVV--HLLSLSNKNFRILALSAT 229
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 308 QYFDEYDRNANRILLANQLRFFRLLSQCFLHETSYLAEYRL 186
Q +D+ ANR L+ F L ++ L +YL +YRL
Sbjct: 536 QTYDQTSSTANRYLIFYACVDFLLAAEVILRFFAYLPDYRL 576
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 12 DKFDVPHAIVCESNKILKFSVR 77
DKFDVP A++ ++ K SVR
Sbjct: 485 DKFDVPFAVILGQDEFAKGSVR 506
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +3
Query: 420 FLEKWRLRRVSAPLMTSRKYPLDSVSRLIPTDFS 521
F E WR S P T Y +DS + LIP FS
Sbjct: 160 FEEPWRKTYASIPFNTLEYYNIDSWA-LIPNPFS 192
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 303 ILVLSLTIAFLNKYKKYRAKDRIDELLNESKE 398
I ++ T+ LN +KKYR+ +RI L E
Sbjct: 152 ISLMQATLQLLNFFKKYRSVERIASLSRSISE 183
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/51 (29%), Positives = 21/51 (41%)
Frame = +3
Query: 342 YKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMTSRKYPLDSV 494
Y R +D + E + Q EFL +LRR L R P+D +
Sbjct: 40 YNLPRVRDAMKEEERSRETKEMQEREFLRLQQLRRAIIRLKNDRSKPIDKL 90
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/87 (19%), Positives = 37/87 (42%)
Frame = +3
Query: 234 EEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQT 413
E A ++ + P + + ++ L + I L + K +K+R+ E+++ +T
Sbjct: 400 EAAAAVRVTRESQPEVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEET 459
Query: 414 NEFLEKWRLRRVSAPLMTSRKYPLDSV 494
EK+ L + + K LD +
Sbjct: 460 RPIREKYELEKSRGSELQDAKRRLDEL 486
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/58 (22%), Positives = 27/58 (46%)
Frame = -2
Query: 534 LRPSRKNL*VLSVILNRGDIFVRSLKAPIPSAVAISLETRLSDVWPLCSHSVTHLYDL 361
L P++ L L+ ++ IF+ + P P+ + D+WP+ S ++ D+
Sbjct: 610 LNPTQAELEALADNIDIVTIFLSLVHPPSPAGELHPIVRLFQDIWPILSRTLDTFSDV 667
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 231 REEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQ 410
R +AK T V S VI + L ++K K K DE++N+ + +R
Sbjct: 548 RFDAKDTNSVLNPCIPSNAVIEFSSIYLHYFATHISKRSKKPGKRLEDEVVNQQQAMLRN 607
Query: 411 TNEFLEKWRLRRVSA 455
L+K+R VS+
Sbjct: 608 LPLLLQKYRESCVSS 622
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.0
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 219 KKTLREEAKKTQLVGKENPISIPVIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNE-SK 395
+++L E +K + I + +V + AF + Y KDR++E++NE ++
Sbjct: 18 RRSLDENERKKKYFFNREGSGIDNFETDGMVFQASKAF-DYYLLTTFKDRVNEIINEQNE 76
Query: 396 EAIRQTNEFLEKWRLRRV 449
E + + + + WR+ V
Sbjct: 77 ENVIDQSRWSKLWRIWNV 94
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 36 IVCESNKILKFSVRQIKMLVQTLSTLMYTFVFLSLFLVDYLLGNGFV 176
+ C L+F++R + + T+ F L V +LLGNGFV
Sbjct: 170 LTCVVIAYLRFALRTMSFSNFKELVISLTY-FWGLLFVIFLLGNGFV 215
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/93 (19%), Positives = 40/93 (43%)
Frame = +3
Query: 288 VIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMT 467
V+FI L + +I Y+ YR + ++ + + ++++ N + R V+ T
Sbjct: 262 VLFISHLDILKSITKQTYYENYRTEKLSNDSPSNTSLSLQKQNSIVANEDKRSVNGSERT 321
Query: 468 SRKYPLDSVSRLIPTDFSYLDEEPQEIKPLKLE 566
+ +D S EE ++I +K++
Sbjct: 322 ETRSSIDQSEMRTNVSDSTKSEELKKINSIKVD 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,375
Number of Sequences: 5004
Number of extensions: 58398
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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