Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17c01
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0033 + 7574845-7575004,7575370-7575429,7575582-7575623,757...    29   4.1  
06_02_0061 - 11043183-11043417,11043556-11043796,11043923-110441...    29   4.1  
08_02_0298 - 15477119-15477724,15478105-15478333,15478368-154784...    28   7.2  
08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414...    27   9.6  

>11_02_0033 +
           7574845-7575004,7575370-7575429,7575582-7575623,
           7576192-7576363,7577881-7577991,7578042-7578132
          Length = 211

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 369 IDELLNESKEAIRQTNEFLEKWR 437
           +DEL+  +K+ +R T++ +EKWR
Sbjct: 189 VDELVVNTKKLVRATSKEIEKWR 211


>06_02_0061 -
           11043183-11043417,11043556-11043796,11043923-11044106,
           11044228-11044437,11045135-11045423,11045787-11045923,
           11046019-11046137,11046405-11046518,11046710-11046803
          Length = 540

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +3

Query: 288 VIFIEILVLSLTIAFLNKYKKYRAKDRIDELLNESKEAIRQTNEFLEKWRLRRVSAPLMT 467
           +I  +I  L+ +   L    KYR  DR++    ++ E    T+   EK    +    L  
Sbjct: 247 LIAYQICTLAASKLLLTDRPKYRKTDRMNNETGQNNEVRNATSPLGEKKHHHKTMKALQR 306

Query: 468 SRKYPLDSVSRLIP 509
           S+ + ++++ RL P
Sbjct: 307 SKTF-MEAIQRLRP 319


>08_02_0298 -
           15477119-15477724,15478105-15478333,15478368-15478498,
           15478556-15478891
          Length = 433

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -2

Query: 264 CQPIAFFSPPLAMFSSRNKLSCRISFGTYQRNHCLTNNRPGINLKRRKC 118
           C  I   S  +A+ + ++K SC   F  + RNH LT     + L+  KC
Sbjct: 350 CLRIMKLSCQVAILAIQHKPSCAKDFNEHDRNHVLTKASENL-LELDKC 397


>08_01_0470 -
           4140669-4140728,4142004-4142270,4142526-4144557,
           4144763-4145550
          Length = 1048

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 420 FLEKWRLRRVSAPLMTSRKYPLDSVSRLIPTDFSYLDEEPQEIKPLKLE----VPILHMA 587
           F  +WRLR ++       + P    S L+P + S+LD + Q ++   +E    +P L   
Sbjct: 747 FASRWRLRHLNLECFELSRLPASVNSSLLP-NLSHLDMKVQVMQEQDMETLGRLPELRCL 805

Query: 588 IIDT 599
           ++D+
Sbjct: 806 VLDS 809


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,929,534
Number of Sequences: 37544
Number of extensions: 334331
Number of successful extensions: 817
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)