Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b24
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    28   1.5  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   4.6  
SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    25   8.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   8.1  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    25   8.1  

>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 653 WKLVSFDNNIFLLVTFVSILIVIEHSLSGMLQNEFLS 543
           W L +  N +F L++ + IL  + +S+SG   + F S
Sbjct: 311 WTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRS 347


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 136 NFAVRRKNNNYRSHANCVACAKIAEKENR*N 228
           N AV    NN  S A CVACA +     R N
Sbjct: 556 NAAVAATQNNSDSFAVCVACALVQRSLERKN 586


>SPAC16E8.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 107

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 520 NNLCSHYIFVDKFFEICILFDIEVMHYYVNHI 425
           N++CSHY F    +E   L  + V+ YY +H+
Sbjct: 44  NSICSHYQFFGGHYESFEL--LVVIVYYFSHV 73


>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 680 EMY*GGNFDWKLVSFDN 630
           E+Y GG  DWK+ +F+N
Sbjct: 750 EIYEGGITDWKIKNFEN 766


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 504 ITFLLINFSKFVFYLILRLCT 442
           + F +  F   +FYL +RLCT
Sbjct: 837 VAFSVFRFIGCIFYLFIRLCT 857


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 264 DTTSCGLFLYTLVSSVLLLGNFGT 193
           D  SCG+ LY+L+S+ L  G   T
Sbjct: 186 DVWSCGVILYSLLSNKLPFGGQNT 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,560
Number of Sequences: 5004
Number of extensions: 52765
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)