Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b24
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1302 + 35567585-35567848,35568303-35568368,35568475-355685...    31   0.90 
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756...    30   2.1  
11_01_0629 - 5057882-5058098,5058541-5058710,5058813-5058968,505...    28   6.4  
03_01_0502 - 3779551-3779562,3779863-3780012,3780129-3780172,378...    28   6.4  
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761...    28   8.4  

>02_05_1302 +
           35567585-35567848,35568303-35568368,35568475-35568573,
           35569028-35569061,35569147-35569246,35569738-35569813,
           35569974-35570315,35570426-35570569,35570840-35571073,
           35571149-35571212,35571297-35571340,35571431-35571601
          Length = 545

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 232 FSFICSPSRQFWHKPHNSRVSDNCYSSF*RRNSFLLKGTSVSSLAVPLR 86
           F ++C P   F  +P     SD C S + RR  F+L G  +   A P R
Sbjct: 99  FIWLCGPITGFVVQPCVGVWSDKCRSKYGRRRPFILAGCLMICFAGPAR 147


>09_04_0097 -
           14573499-14574110,14574977-14575017,14575424-14575616,
           14575697-14575837,14575970-14576197,14576297-14576552,
           14576866-14577069,14577157-14577245,14577346-14577416,
           14577498-14577579,14577653-14577715,14578018-14578155
          Length = 705

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 116 FCIFLGCSFTSVTCLYMFICLRFKHIIRVRTVQQLR 9
           F + L  ++ +V CL    C R   +IR +TV+++R
Sbjct: 643 FDLILAANYLNVPCLLALACQRAADLIRGKTVEEIR 678


>11_01_0629 -
           5057882-5058098,5058541-5058710,5058813-5058968,
           5059113-5059241,5059621-5060109
          Length = 386

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 183 LCGLCQNCREGEQMKLKC 236
           LCGLC NCR+ + +   C
Sbjct: 169 LCGLCANCRDNDNISGTC 186


>03_01_0502 -
           3779551-3779562,3779863-3780012,3780129-3780172,
           3780256-3780319,3780422-3780655,3780765-3780908,
           3781027-3781221,3781447-3781522,3781689-3781788,
           3781955-3781988,3782076-3782160,3782226-3782290,
           3782380-3782478,3782810-3782875,3785485-3785721
          Length = 534

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 232 FSFICSPSRQFWHKPHNSRVSDNCYSSF*RRNSFLLKGTSVSSLAV 95
           F ++C P      +P     SD C S + RR  ++L G  +  LAV
Sbjct: 90  FMWLCGPIAGMVVQPCVGLYSDRCTSKWGRRRPYILTGCVLICLAV 135


>09_02_0348 -
           7616686-7616802,7616888-7617176,7617259-7617429,
           7617508-7617680,7617789-7618394,7618482-7618793,
           7619007-7619032,7619077-7619191
          Length = 602

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 121 PSRERNFAVRRKNNNYRSHANCVA 192
           P R+RN +VR K    R+H +C+A
Sbjct: 2   PVRKRNGSVRMKKRRNRAHRSCLA 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,447,726
Number of Sequences: 37544
Number of extensions: 272238
Number of successful extensions: 579
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)