Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b24
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00046-11|AAK84562.1|  149|Caenorhabditis elegans Knl (kinetocho...    28   7.6  
AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U00046-11|AAK84562.1|  149|Caenorhabditis elegans Knl (kinetochore
           null) bindingprotein protein 1 protein.
          Length = 149

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 55  KQINMYKHVTDVKEQPRKIQKFPSRERNFAVRRKNNNYRSHANCVACAKIAEKEN 219
           K IN  +   +V+   ++  K    ERN  +RR+N N +   N VA   + E E+
Sbjct: 94  KMINNIRQRVEVQVADQETFK-SIEERNELLRRENENLKKEVNTVAAELLQEFES 147


>AF016432-2|AAB65380.2|  522|Caenorhabditis elegans Hypothetical
           protein C07G3.8 protein.
          Length = 522

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 223 ICSPSRQFWHKPHNSRVSDNCYSSF*RRNSFLLK 122
           +C  S  F+  P ++++SD C  S   +NS+ LK
Sbjct: 411 VCEKSHCFYMDPESAKLSDTC-ESMALKNSYFLK 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,799,889
Number of Sequences: 27780
Number of extensions: 293630
Number of successful extensions: 884
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)