Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b24
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.93 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.2  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.7  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 550  NSF*SMPDNECSITINIETNVTNKNMLLSNDT 645
            N+  ++P NE    +N+ET  TN+ M    DT
Sbjct: 1067 NTSLALPKNEGPFRLNVETAKTNEEMWELIDT 1098


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 585 YHNQY*NKCY**KYVIIKRYQLPIEISTLIH 677
           Y+N Y N C    Y II   Q+P+ +   I+
Sbjct: 343 YNNNYNNNCKKLYYNIINIEQIPVPVPVPIY 373


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -1

Query: 659 FDWKLVSFDNN-----IFLLVTFVSILIVI 585
           FDWK V+  ++     +F L T VS  +++
Sbjct: 419 FDWKQVALVSDRALLCVFFLTTIVSTTVIL 448


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,403
Number of Sequences: 438
Number of extensions: 4021
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)