Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b19
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    35   0.054
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     31   1.2  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    30   1.5  

>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 35.1 bits (77), Expect = 0.054
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = -2

Query: 568 LAHKAGTNQMKDMGRRGRTVRIETDRVHKAHSMACKTTGMVHSTGNISACKARMVQNTVR 389
           L  K      +  GR+   +R++T ++H A S+A   T +    GN  + ++    NT+ 
Sbjct: 134 LKSKLANMVQRGCGRKREDIRLQTAQMHAALSVARLATAVARMVGNCQS-ESTNANNTIM 192

Query: 388 TVHMGRYKDRKAHM 347
           T  +G+ + RK H+
Sbjct: 193 TA-IGKDEHRKMHV 205


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 631 VSKTLHRGYTAHTEGSGHRAALAHKAGTNQMKD 533
           VS T       H EG  H+A LAH   +N +KD
Sbjct: 260 VSATSEGALNEHLEGKRHKAKLAHCGASNAIKD 292


>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 459  VLQAILWALWTLSVSMRTVRPLRPMSFIWFVPALWANAALW 581
            +L + +  LW L      VRPL P+ + W+    WAN   W
Sbjct: 1313 ILISFVLPLWNLFAGFLVVRPLIPIWWRWY---YWANPVSW 1350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,250
Number of Sequences: 37544
Number of extensions: 235469
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)