Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b18
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   2.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   8.6  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 176 NSDNNPQNLANSYSTNHGSCQ 238
           N +NN  N  N+Y+TN+   Q
Sbjct: 93  NYNNNYNNYNNNYNTNYKKLQ 113


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 302 SMD*CSHARENHSYCDCDNRLVDNFHDL*NNCLLSSEDYYQ 180
           SMD  + A   +S+   D+    N +   ++CLL   D YQ
Sbjct: 80  SMDSQNSASTYNSFLSSDSASSGNVYCKCDDCLLGIVDDYQ 120


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 173 SNSDNNPQNLANSYSTNHGSCQQ 241
           S S N+P+N   + + NH +  Q
Sbjct: 105 STSSNDPKNQYKNQNNNHYTSHQ 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,773
Number of Sequences: 438
Number of extensions: 2342
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)