Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17b13
(616 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 194 1e-50
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 193 2e-50
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 106 2e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 99 4e-22
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 27 1.6
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 3.8
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 5.0
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 26 5.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 6.6
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 6.6
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 8.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 194 bits (472), Expect = 1e-50
Identities = 89/162 (54%), Positives = 116/162 (71%)
Frame = +3
Query: 126 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 305
MRE IS+HVGQAG Q+G ACW+LYCLEHGI+P+G + ET +D F+TFFSE +G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNP-ETASQNSDGGFSTFFSETGQG 59
Query: 306 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 485
K VPR + VDLE VID+VR+G YR L+HPEQLITGKEDA+NNYARGHY+ G+E++ V
Sbjct: 60 KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 486 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEF 611
++IR++AD C+GLQ LL+E+L+ E+
Sbjct: 120 DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEY 161
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 193 bits (470), Expect = 2e-50
Identities = 91/166 (54%), Positives = 116/166 (69%), Gaps = 3/166 (1%)
Frame = +3
Query: 126 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG-TLPACETDPNTA--DSCFNTFFSEA 296
MRE ISVHVGQAGVQ+G ACW+LYCLEHGI PDG E N + + F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60
Query: 297 DRGKMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLS 476
+GK VPR + VDLE VID+VR+G Y+ L+HPEQ++TGKEDA+NNYARGHY+ G+E++
Sbjct: 61 GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120
Query: 477 PVMERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEFG 614
V+ERIR++AD C+GLQ LL+E+L+ E+G
Sbjct: 121 SVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYG 166
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 106 bits (255), Expect = 2e-24
Identities = 54/162 (33%), Positives = 83/162 (51%)
Frame = +3
Query: 126 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRG 305
MRE + + GQ G Q+G A W EHG+ G + N +F+EA G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHER---LNVYFNEAAGG 57
Query: 306 KMVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPVM 485
K VPR V+VDLE +D V+SG++ L+ P+ +I G+ A N +A+GHY+ G E+ V+
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 486 ERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEF 611
+ +R+ A+ C LQ LL+ K+ +E+
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEY 159
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 99.1 bits (236), Expect = 4e-22
Identities = 54/163 (33%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Frame = +3
Query: 129 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDPNTADSCFNTFFSEADRGK 308
RE I++ GQ G Q+G WQ CLEHGI PDGTL + T+ + FF ++D +
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRK---DVFFYQSDDTR 59
Query: 309 MVPRVVMVDLEATVIDEVRSGEYRQLYHPEQLITGKE--DAANNYARGHYSTGREVLSPV 482
+PR +++DLE V++ + S Y LY+PE ++ K A NN+A G YS + +
Sbjct: 60 YIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDI 118
Query: 483 MERIRKLADQCTGLQXXXXXXXXXXXXXXXXXXLLMEKLSDEF 611
M+ I + AD L+ L+E+L+D +
Sbjct: 119 MDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRY 161
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -1
Query: 388 YSWRYSPERTSSITVASKSTITTLGTIFPRSASEKNVLKQESAVLGSVSQAGRVPSGRIP 209
Y+ Y P T +++ STI+TL T+ S ++ K S G++++ + SG +
Sbjct: 167 YTSTYLPNSTIDLSILPHSTISTLSTVSINDTS-ASLSKTTSPTAGTITET--IVSGSVG 223
Query: 208 CSKQYSCQHAT 176
+ + T
Sbjct: 224 YTSTFPASGTT 234
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 3.8
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 400 CSG*YSWRYSPERTSSITVASKSTITTLGTIFPRSASEKNVLKQESAVLGSVSQAGRVPS 221
C+ S R +R S + VA + + L I P KN+L + + V+ G V
Sbjct: 424 CNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDI--KNLLVERLHLDTRVTTLGHVQR 481
Query: 220 GRIPCS 203
G IPC+
Sbjct: 482 GGIPCA 487
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 5.0
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +3
Query: 357 EVRSGEYRQLYHPEQLITGKEDAANNYARGHYSTGREVLSPV 482
EVR + + E LI GK+ Y R H EVL PV
Sbjct: 1010 EVRGSQMIDTFSTELLIPGKQRVQRTYRRTH-----EVLEPV 1046
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 249 QFHKRAGFRQVGSRAPSSIAASTRRPSGPRLGP 151
+ HKR GF + S+A+ T R GP
Sbjct: 186 KLHKRQGFIDINFEVSGSLASGTVHYQSQRFGP 218
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 481 LWSELGNLPINVPDY 525
LWSELG P +VP Y
Sbjct: 207 LWSELGVEPADVPQY 221
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +3
Query: 234 PACETDPNTADSCFNTFFSEADRGKMVPRVVMVDLEATVIDEVRSG--EYRQLY--HPEQ 401
P+ DP +S +E +G+ ++DL + +DE R+ E+ + + P Q
Sbjct: 4 PSFHEDPTKDESTV----AEQRKGQSNEEKPLIDLNDS-LDEQRNAYNEHCKNHDQQPSQ 58
Query: 402 LITGKEDAANNYARGHYSTGREVLS 476
+ ED AN Y + S+ +EV++
Sbjct: 59 QVRNMEDEANQYEQTDSSSDQEVMN 83
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 8.7
Identities = 7/23 (30%), Positives = 14/23 (60%)
Frame = -3
Query: 311 HLPSISLRKKRIEAGIRCIRISF 243
H PS+ + ++R E +RC + +
Sbjct: 884 HFPSLGILERRFEGQLRCFHMGY 906
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,909
Number of Sequences: 5004
Number of extensions: 43764
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -