Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17b12
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 43 3e-05
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 42 6e-05
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 38 0.001
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 38 0.001
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 34 0.015
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S... 34 0.015
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 33 0.026
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 33 0.026
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.034
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 33 0.045
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 32 0.059
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 32 0.079
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 32 0.079
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 32 0.079
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 32 0.079
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 31 0.10
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 30 0.24
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 30 0.32
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 29 0.73
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 28 1.3
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 28 1.3
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 27 3.0
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 3.0
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 25 6.8
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 9.0
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 9.0
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 9.0
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 43.2 bits (97), Expect = 3e-05
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 435 ETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYEN 590
+ L+ T + H + RD+ F+ DG ST+ DK+I D E GK C+ +
Sbjct: 299 DRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFNS 350
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 42.3 bits (95), Expect = 6e-05
Identities = 26/95 (27%), Positives = 46/95 (48%)
Frame = +3
Query: 336 DEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNII 515
D + + +SP K +A A + LY+ NT + T E H I F+ DG +
Sbjct: 40 DSQVNRLCISPDKKFLAAAGNP-HVRLYDINTSSQMPLMTFEGHTNNVTAIAFHCDGKWL 98
Query: 516 FSTAKDKSIMATDVETGKLKRCYENAHQDPVYRLL 620
++++D ++ D+ ++R Y+ H+ PV LL
Sbjct: 99 ATSSEDGTVKVWDMRAPSVQRNYD--HKSPVNDLL 131
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/91 (24%), Positives = 41/91 (45%)
Frame = +3
Query: 336 DEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNII 515
++ I D++ SP +A + + +YE + L H + ++ DG +
Sbjct: 30 EDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNWSRDGTKV 89
Query: 516 FSTAKDKSIMATDVETGKLKRCYENAHQDPV 608
S + DKS D++TG+ ++ AH D V
Sbjct: 90 ASGSVDKSAKVFDIQTGQNQQV--AAHDDAV 118
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Frame = +3
Query: 324 SITCDE----FIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLK----AC 479
+I+C++ F + +S + IA A I++++FN +++ +L AC
Sbjct: 138 TISCEKTPLLFCATVQISGNEIYIASASAFQQIYVWKFNYNNPPSCVSIDTYLVGHEGAC 197
Query: 480 RDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYENAHQDPVYRLLCL 626
D++F+SDG + S ++D+++ +E+ H V+R + L
Sbjct: 198 FDLKFSSDGRYLCSVSEDRTLRLWSIESSPFLIATGFGHSARVWRCVFL 246
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 34.3 bits (75), Expect = 0.015
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = +3
Query: 357 SLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDK 536
SL+ NIIA + DI L++ ++ K + L H RDI + DG I + + D
Sbjct: 181 SLAANNNIIANGGLQKDIQLWDCVSK--KRITDLVGHTDNVRDILISDDGRTILTASSDA 238
Query: 537 SIMATDVETGKLKRCYENAHQDPVYRL 617
+I + K + AH D V+ L
Sbjct: 239 TIKLWSLRAQKCLFSF-IAHSDSVWAL 264
>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 402 GDIHLYEFNTEETKLVN--TLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKL 572
G + Y+++ + LV + + H K+CR+I N G S D + D TG++
Sbjct: 35 GRVSSYQYDVAQISLVEQWSTKRHKKSCRNISVNESGTEFISVGSDGVLKIADTSTGRV 93
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 33.5 bits (73), Expect = 0.026
Identities = 18/80 (22%), Positives = 39/80 (48%)
Frame = +3
Query: 324 SITCDEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSD 503
SI E ++ + SP + +A G+ LY ++ + L+ H + ++F++D
Sbjct: 72 SIILPEILICVQSSPCGSWLAAGTEKGN--LYIWSLKSGALIYFFRAHYQPLTILKFSND 129
Query: 504 GNIIFSTAKDKSIMATDVET 563
G ++F+ + D + A + T
Sbjct: 130 GMVLFTASNDGDVFAWLIST 149
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 33.5 bits (73), Expect = 0.026
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +3
Query: 321 PSITCDEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNS 500
P + D ++ I+ SP + I L++ +T++ + V H + ++F+
Sbjct: 355 PDPSRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYV--FSGHEQDIYSLDFSH 412
Query: 501 DGNIIFSTAKDKSIMATDVETGK 569
+G I S + D++ DVETG+
Sbjct: 413 NGRFIVSGSGDRTARLWDVETGQ 435
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.1 bits (72), Expect = 0.034
Identities = 18/80 (22%), Positives = 39/80 (48%)
Frame = +3
Query: 336 DEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNII 515
D ++ ++ SP +A V D + ++ + ++ L H + ++F+ DG +
Sbjct: 334 DLYVRSVAFSPDGKYLATG--VEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTL 391
Query: 516 FSTAKDKSIMATDVETGKLK 575
S + D+++ DVE G+ K
Sbjct: 392 VSGSGDRTVCLWDVEAGEQK 411
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 32.7 bits (71), Expect = 0.045
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 456 LEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYE 587
L+ H + I++N DG+++FS AKDK I G+ YE
Sbjct: 6 LQGHERPLTQIKYNHDGDLLFSCAKDKVINVWFSHNGERLGTYE 49
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 32.3 bits (70), Expect = 0.059
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Frame = +3
Query: 363 SPAKNIIAVADIVGDIHLYEFNTEETKLVNTLE-VHLKACRDIEFNSDGNIIFSTAKDKS 539
SP + V G+I++Y + V+T++ VH + +E+N DG S D
Sbjct: 253 SPINWTLLVGGSTGNIYVYRRTKSMMRRVHTIKKVHQEQVCGLEWNYDGTQFASGGNDNL 312
Query: 540 IMATDVETGKLKRCY 584
+ D+++ + K+ Y
Sbjct: 313 VCIFDIDSLENKKFY 327
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 31.9 bits (69), Expect = 0.079
Identities = 17/67 (25%), Positives = 33/67 (49%)
Frame = +3
Query: 369 AKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMA 548
A N++A + I L++ + ++V C+ + FN+DG + +T++DK +
Sbjct: 146 AANVLASSSADNTIKLWDCEKGVAHVSLKMDV---MCQSMSFNADGTRLVTTSRDKKVRV 202
Query: 549 TDVETGK 569
D T K
Sbjct: 203 WDPRTDK 209
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.9 bits (69), Expect = 0.079
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 441 KLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKL 572
+ V T++ H + I+ + DG II S ++DK+I D TG++
Sbjct: 456 RAVWTIKAHDRDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEV 499
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.9 bits (69), Expect = 0.079
Identities = 25/89 (28%), Positives = 40/89 (44%)
Frame = +3
Query: 315 HPPSITCDEFIVDISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEF 494
H S+TC +S+SP K IA + G I ++ T +L TL H + +++
Sbjct: 53 HEKSVTC------VSVSPNKRWIATSSSDGTIKIWSALT--FRLECTLFGHYRGISQVKW 104
Query: 495 NSDGNIIFSTAKDKSIMATDVETGKLKRC 581
+ + S + DK+I D E RC
Sbjct: 105 ATGSKYLASASDDKTIRIWDFEKRCSVRC 133
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 31.9 bits (69), Expect = 0.079
Identities = 18/55 (32%), Positives = 27/55 (49%)
Frame = +3
Query: 453 TLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYENAHQDPVYRL 617
TL H+ R + + +FS +DK + D+ET K+ R Y + H VY L
Sbjct: 200 TLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHY-HGHLSGVYAL 253
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +3
Query: 354 ISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKD 533
I++ P+ I+ A ++ ++ + +L+ TL H + FNS G+++ S + D
Sbjct: 430 IAVDPSGEIVC-AGSQDSFEIFMWSVQTGQLLETLAGHEGPVSSLSFNSSGSLLASGSWD 488
Query: 534 KSIMATDV 557
K++ D+
Sbjct: 489 KTVRIWDI 496
Score = 30.3 bits (65), Expect = 0.24
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 363 SPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSI 542
S + II AD G I +++ N+ + T H A + F+ GN++FS++ D S+
Sbjct: 349 SDGQRIITGADD-GKIKVWDMNSGFC--IVTFTQHTSAVSGLCFSKRGNVLFSSSLDGSV 405
Query: 543 MATDV 557
A D+
Sbjct: 406 RAWDL 410
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 30.3 bits (65), Expect = 0.24
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 414 LYEFNTEETK-LVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKL 572
+Y ++T+ K + +H DI +N DGN++ T+ D E G+L
Sbjct: 400 VYIYDTQTCKPFYRAVNLHYSNLTDIAWNDDGNVLLMTSIDGFCSVITFEPGEL 453
Score = 28.3 bits (60), Expect = 0.97
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 426 NTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIM 545
++ + + ++TL H +A + FN +GNI+ + + +IM
Sbjct: 53 SSTKVEYLSTLSRHTQAVNVVRFNPEGNILATAGDEGTIM 92
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.9 bits (64), Expect = 0.32
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 432 EETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGK 569
+ TK + + H K F+ DG I + + D S+ D +TGK
Sbjct: 377 KSTKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTGK 422
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 28.7 bits (61), Expect = 0.73
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 12/104 (11%)
Frame = +3
Query: 354 ISLSPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKD 533
+S+ P ++ + +Y+ + + LV +L + A + F+ DG + + +
Sbjct: 223 MSIHPYFPLLLTCGFDRTLRIYQLDGKVNPLVTSLHLRSSALQTALFHPDGKRVIAAGRR 282
Query: 534 KSIMATDVETG---KLKRCY---------ENAHQDPVYRLLCLE 629
K + D+E+ K+ R Y E H DP + + LE
Sbjct: 283 KYMYIWDLESAQVQKVSRMYGQENFQPSMERFHVDPTGKYIALE 326
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +3
Query: 324 SITCDEFIVDISLSPAKNIIAVADIVGDIHLYEFN 428
S+ + DIS P + +A + GD+ +Y++N
Sbjct: 263 SVVGTPIVTDISCHPTMDDFIIATVHGDLFIYQYN 297
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 423 FNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSIMATDVETGKLKRCYEN 590
F+ K V L H+ I ++ D + S + DKS++ D TG+ R Y++
Sbjct: 240 FDVVNLKRVFRLIGHIDTVAYIRWSPDDRYLLSCSCDKSVILWDAFTGEKLRDYKH 295
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 378 IIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSI 542
++AVA + + E ++ + LE H + I ++ +GN + + ++DKS+
Sbjct: 348 VLAVASFDSVVSINEKIDDDWECTAALEGHENEVKCIAWSCNGNYLATCSRDKSV 402
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.6 bits (56), Expect = 3.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 453 TLEVHLKACRDIEFNSDGNIIFST 524
T VHL+ R ++F+S G I +ST
Sbjct: 109 TKSVHLQTDRTVDFHSQGGIHYST 132
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 336 DEFIVDISLSPAKNIIAVADIVGDIHLYEFNT 431
D+F V++ AKN++A + GD+ ++ +T
Sbjct: 508 DQFGVELGKKLAKNVLAQLETKGDVENHDSST 539
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.0 bits (52), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 503 WEYNFLYSQGQIYNGYR 553
W + L+++G++Y GYR
Sbjct: 155 WVFKELHTKGKVYRGYR 171
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 111 KMTYDFKEFEKNSSDDESISSDG 179
K DF+EF++ + DE +SS+G
Sbjct: 190 KWMTDFEEFQQAVTKDEGMSSEG 212
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.0 bits (52), Expect = 9.0
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +3
Query: 363 SPAKNIIAVADIVGDIHLYEFNTEETKLVNTLEVHLKACRDIEFNSDGNIIFSTAKDKSI 542
+P + V G + L+ + T LV L H RD+ N DG + + D +
Sbjct: 232 NPHNAVEHVGHANGQVTLWS-PSSTTPLVKML-THRGPVRDLAVNRDGRYMVTAGADSLL 289
Query: 543 MATDVETGKLKRCY 584
D+ T K Y
Sbjct: 290 KVWDLRTYKELHSY 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,984
Number of Sequences: 5004
Number of extensions: 29158
Number of successful extensions: 130
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -