Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b11
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    29   0.54 
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    28   1.2  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    28   1.2  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   2.2  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    27   2.9  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    26   3.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    26   3.8  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   5.0  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    25   6.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.8  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   8.8  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   8.8  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
            Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 336  FINNTKPDIIEQFSKMMTDEEKS--KIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDS 509
            FI+N +P +     K +    K+  K+   +    VK     +R        REK  K S
Sbjct: 785  FISNVRPKLFAYPPKSVQPTAKTVQKVETAVLSTTVKAQARAKRAE------REKASKGS 838

Query: 510  NEDEDKVE--SVDETYENPYIVDKSQLEEI 593
            N+DE K++  + +E    P  +D+ + ++I
Sbjct: 839  NDDEMKIDKKTTEEKEATPMEMDEEKSQDI 868


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/91 (28%), Positives = 39/91 (42%)
 Frame = +3

Query: 342  NNTKPDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDE 521
            N  KPD+I    K   D   S+  KL+   A  E Q       L+KD       ++NE  
Sbjct: 917  NGAKPDVIGASGKKPIDLSSSEPIKLVFKEANNE-QAQSISRSLIKDSEGSI--NTNETL 973

Query: 522  DKVESVDETYENPYIVDKSQLEEIERETGTI 614
            +    V+E  E+  +  KS  E +  +T T+
Sbjct: 974  ESTSIVNEIEESA-VQTKSYSESMWNKTVTM 1003


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 216 LKHQLMNSFWCKQVDGNTKRNSLYTFLA 133
           L+H + NSF    +DG+T  N    FLA
Sbjct: 246 LRHAINNSFNSISIDGDTSTNDTIAFLA 273


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 489 EKFGKDSNEDEDKVESVDETYENPYIVDKSQLEEIERETGT 611
           E F K  ++  +K +S+ ETYE      K +LEE+  E  T
Sbjct: 51  EAFRKTVDDMYEKQKSIRETYEKDINKLKRELEELGVEANT 91


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 182 LHQNEFISWCFKFIKPTTKPN*KIAKIFFPTPLN 283
           LH+ +F   C+++++     N   A++FF   L+
Sbjct: 72  LHEQDFYDLCYQYLRKAASQNVVYAEMFFDPQLH 105


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 501 KDSNEDE--DKVESVDETYENPYIVDKSQLEEIER 599
           K SNE +    V+  +   EN YIVDK ++ E+++
Sbjct: 24  KHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKK 58


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 588 LQVVIYQLCMDFHTFRQRIRL 526
           L ++++++CM F T  +RIR+
Sbjct: 849 LGIILFEMCMTFSTSMERIRI 869


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 405 KIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETY 551
           K+  LLH++ VK+  LPE    L+K +        +  E+K +S+  T+
Sbjct: 420 KLRLLLHELLVKKKALPELDKDLLKFVWVVDFPLFSPTEEKNQSITSTH 468


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 390 DEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYENPYIV 569
           D  K+ ++K  H  A  E Q      G   ++ E+   D +EDED+ E  D    N +++
Sbjct: 178 DTSKNGLSKKQHSEAQPEVQ------GNDDEVEEEDDDDDDEDEDEDEDEDNNNNNRWLL 231


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 438 KENQLPERCSGLVKDIREKFGKDSNEDEDKVES 536
           KE++     + L KD+ EK  K +NED  K E+
Sbjct: 424 KESKDENNKASLHKDVEEKDTKITNEDTGKTET 456


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 342 NNTKPDIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNED 518
           N   P I+   +K +    KS    +  D  +   + P  C G  K + +KFG D + +
Sbjct: 320 NYHNPSILLIKAKKINANHKSSSRPISLDATIPR-KYPPHCIGTDKAVPQKFGADFHNE 377


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 357  DIIEQFSKMMTDEEKSKIAKLLHDVAVKENQLPE 458
            D+IE+F K+ + E+   ++ L+    +K   L E
Sbjct: 1264 DLIEKFEKLSSSEKNDNLSNLIERQIIKYRSLFE 1297


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 513 EDEDKVESVDETYENPYIVDKSQLEEIERETGTID 617
           +++ K +  D+  E   + DK+Q++EIE+    +D
Sbjct: 272 KEKAKEKQKDKDQEQDTVSDKNQIDEIEKGQKEVD 306


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
 Frame = +3

Query: 471 LVKDIREKFGKDSNED------EDKVESVDETYENPYIVDKSQ 581
           L++  REKFGKD ++         K   +D T E P+ V +++
Sbjct: 33  LIEWFREKFGKDISQPSVSQILSSKYSYLDNTVEKPWDVKRNR 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,202
Number of Sequences: 5004
Number of extensions: 59061
Number of successful extensions: 201
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)