Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b11
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960           29   3.0  
11_06_0185 + 21018045-21022307                                         29   3.9  
04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632     28   5.2  
03_05_0354 + 23411485-23411802,23411886-23412176,23414610-234146...    28   5.2  
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375...    28   6.8  
03_02_0715 + 10621789-10623243,10624074-10625018                       28   6.8  
01_07_0320 + 42708082-42708324,42708359-42708409,42708987-427091...    28   6.8  
03_06_0722 - 35751490-35754357                                         27   9.0  

>11_01_0635 - 5091381-5091562,5092800-5092866,5093079-5093960
          Length = 376

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +3

Query: 375 SKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVDETYE 554
           S   T   +S  + L    + KE ++ E       ++ E   +DS+EDED+ E   ++Y 
Sbjct: 300 SSTCTGSRESHSSDLFQVFSFKEIEILEGYDNDQDEVEEDEDEDSHEDEDENE---DSYG 356

Query: 555 NPY--IVDKSQLEEIERE 602
           +PY    D    +E+E E
Sbjct: 357 DPYEDEDDDEDGDEVEEE 374


>11_06_0185 + 21018045-21022307
          Length = 1420

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 504 DSNEDEDKVESVDETYENPYIVDKSQLEEIERETGT 611
           D ++DE++ E  D+  E P  + + Q E+I RE  T
Sbjct: 523 DDDDDEEEEEEDDDDEEEPIHLHEDQYEQILREVFT 558


>04_04_1365 - 32967604-32968367,32969097-32969221,32969583-32969632
          Length = 312

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 341 YKIYCRLGNHWHRCSHSQINLV 276
           Y  Y RL NHW++C  + +  V
Sbjct: 260 YVTYLRLNNHWYKCDDAWVTRV 281


>03_05_0354 +
           23411485-23411802,23411886-23412176,23414610-23414675,
           23415186-23415645,23415963-23416189,23416362-23416649,
           23416955-23416966
          Length = 553

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 456 ERCSGLVKDIRE--KFGKDSNEDEDKVESVDETYENPY 563
           ER     +D RE  K G D +EDED+ E VD+  E+ Y
Sbjct: 16  ERACLAEQDHREEKKEGDDEDEDEDEDEDVDKDGEDRY 53


>03_05_0175 +
           21513767-21513903,21534361-21535385,21537375-21537547,
           21537849-21538679
          Length = 721

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/80 (18%), Positives = 40/80 (50%)
 Frame = +3

Query: 363 IEQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKDSNEDEDKVESVD 542
           +E+  ++  +E + +I +   ++  +E ++ E      +++ E+    + E +   E  D
Sbjct: 63  VEEEEEIEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDAD 122

Query: 543 ETYENPYIVDKSQLEEIERE 602
           E+ ++   V K + +E E+E
Sbjct: 123 ESSKSAIPVQKQEEDEAEKE 142


>03_02_0715 + 10621789-10623243,10624074-10625018
          Length = 799

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 366 EQFSKMMTDEEKSKIAKLLHDVAVKENQLPERCSGLV-KDIREKFGKDSNEDEDKVESVD 542
           E++ +   DEE+ +  +    V  +EN    +    V +  R K+  D +  E++ + VD
Sbjct: 62  EEYEEGDEDEEEDETPRPRQPVKSRENGRKGKADPPVARSRRRKYEDDDDYSEEEDDRVD 121

Query: 543 ETYENPYIVDKSQLEEIERE 602
           E Y      ++  LEE E E
Sbjct: 122 E-YGEDLEEEEEDLEEEEEE 140


>01_07_0320 +
           42708082-42708324,42708359-42708409,42708987-42709122,
           42709226-42709275,42709978-42710066,42710398-42710434,
           42710435-42710471,42710588-42710733,42711099-42711241,
           42711735-42711768,42711962-42712064,42712236-42712381,
           42712982-42713323,42713416-42713656,42713733-42713788,
           42713852-42713920
          Length = 640

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 140 NVYREFLFVLPSTCLHQNEFISWCFKFIKPTT 235
           N+Y +FL  + STC  ++  + W F  I+ TT
Sbjct: 446 NIYGDFLQEITSTCCLEDVEMGWAFCPIRVTT 477


>03_06_0722 - 35751490-35754357
          Length = 955

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 501 KDSNEDEDKVESVDETYENPYIVDKSQLEEI 593
           ++ ++DED+ E  +E  E P I D++ +E I
Sbjct: 207 QNEDKDEDESEEEEEEEEGPVIPDRATIEAI 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,394
Number of Sequences: 37544
Number of extensions: 312406
Number of successful extensions: 820
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)