Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b07
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   2.4  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   5.5  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    25   7.3  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   7.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   9.7  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   9.7  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   9.7  
SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr ...    25   9.7  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 197 HNFQFQRNSILYSTSHAFEVAYICVTWLSTIHSSC*LDF 81
           H+F F ++  L ++ H F+    C   LS +H+ C   F
Sbjct: 33  HSFMFVKSLHLMTSQHIFKCLSSCNYALSILHNICLASF 71


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 398 WAVLVKIAKSVVEYTYTN-LDNSVGPEDAESCQLMQLWVVWMLAAGPLAY 544
           W+V  +I    + + +T    NS    DA  C+L+ +W V    +  + Y
Sbjct: 101 WSVCRQIPSDDMAFKFTKCFQNSQQFRDANFCKLVLVWTVCQCVSSTVYY 150


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 211 PLNELITFNFNVIPYCIPHHMHLKLHTY 128
           P N+L     N+IPY +  H+H +  +Y
Sbjct: 740 PKNDLNVLTNNLIPYSLTDHIHEREISY 767


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = -1

Query: 433 DYRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPTERET-SEQGRDHSLRQQHGANRP 257
           D R RD  + R      D    ++   +     R P+      +  RDH  R++  + RP
Sbjct: 148 DSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDDDDRDHRSRRRSRSRRP 207

Query: 256 QHRRGRR 236
              R RR
Sbjct: 208 GRSRSRR 214


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -3

Query: 413 SPAPPRNVSCRSPSTGKG--DFAKPA 342
           S APP + +  +P+TG G   F KPA
Sbjct: 183 SNAPPASSTSTTPATGSGGFSFGKPA 208


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 224 RRIVPIERTHNFQFQRNSILYSTSHAFEVAYICVTWLSTIHSS 96
           R +  IE   +  +Q    +Y  ++AF +A +  +W S I SS
Sbjct: 62  RGVSKIEAVRDSIYQNKRGMY-LAYAFGIAILACSWASAIQSS 103


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 371 WMVIYSLHFWAVLVKIAKSVVEYTYTNLDNSVGP 472
           WMV + L   A+L K+  SV E   +++    GP
Sbjct: 58  WMVYWELSSLAILGKLDSSVCERAISSVRQLKGP 91


>SPBC1683.02 |||adenine deaminase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 511 DPQLHELTALCVFWTDTVIKICISIFDYRFRDFH 410
           DPQLH    +     +TVIK  I   D   RDFH
Sbjct: 101 DPQLHTRRGISF---ETVIKGLIRARDDAMRDFH 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,570
Number of Sequences: 5004
Number of extensions: 55919
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)