Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte17b07
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 35 0.066
11_01_0522 - 4103138-4103926 31 1.1
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 30 1.4
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 30 1.4
04_03_0515 + 16698589-16701066 29 3.3
11_04_0475 - 18176578-18177252,18180101-18180664 28 7.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 28 7.6
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 28 7.6
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 34.7 bits (76), Expect = 0.066
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -1
Query: 373 PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRRGRRDQ 230
PQE++ Q Q + P E+ EQ + +QQ NRPQ ++ ++ Q
Sbjct: 567 PQEQQQQQQQKQQIKPQEKMGKEQTKPEEQQQQQKTNRPQEQQHKKPQ 614
>11_01_0522 - 4103138-4103926
Length = 262
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 577 AAHDMDHDEPVAAPRDG 627
AAH+ DHDEP AAP G
Sbjct: 163 AAHEADHDEPAAAPAYG 179
>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -1
Query: 487 ALCVFWTDTVIKICISIFDYRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPTERETS 308
A C + +K+CI FD + HQ + E A + + + L K T+R
Sbjct: 1164 AKCKKFAKPDLKVCIEEFDEKLSKVHQEKKEQEATTRNAEAHKQRIGSLDKLMVTKRTGK 1223
Query: 307 EQGRDHSLRQQ 275
++G+ + ++
Sbjct: 1224 DKGKSAEVAEE 1234
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -1
Query: 412 HQHRPEM*AVDHHPQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRRGRRD 233
HQH + Q++++ Q Q ++ +++ +Q + +QQ N+PQH +
Sbjct: 49 HQHLQQQ--QQQQQQQQKLQQQQQQQQQKLQQQQQQQQQKLQQQQQQQQNQPQHSSQQSQ 106
Query: 232 QT 227
QT
Sbjct: 107 QT 108
>04_03_0515 + 16698589-16701066
Length = 825
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -2
Query: 399 QKCKL*ITIHRKRRFCKTSSQNGTLRNAKRLNKAAIILCASSTAPTAHNTVGAAV---TR 229
+K +L T R+RR TS + T R ++I+ ++ + TA +T AA R
Sbjct: 45 EKPRLLTTARRRRRRRSTSVMSQTTAPMSRRRLSSILASTATASSTAASTTTAATASPAR 104
Query: 228 PSP 220
PSP
Sbjct: 105 PSP 107
>11_04_0475 - 18176578-18177252,18180101-18180664
Length = 412
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Frame = +1
Query: 547 SIHESEARESAAHDMDHD---EPVAAPRDGPVRLLPEPA 654
S H S + S A DMD D EP AA P P PA
Sbjct: 3 SAHSSHSSVSTAADMDEDDDDEPSAASAAAPAPPAPAPA 41
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = -1
Query: 460 VIKICISIFD-YRFRDFHQHRPEM*AVDHHPQEKEILQNQLPKRNPT---ERETSEQG 299
V++ C S D YRF DFH H + + N +P + + R T QG
Sbjct: 3359 VLEYCFSDMDPYRFSDFHIHEESRVSNQQSEIMNSSISNSMPSSSSSVSYHRNTQRQG 3416
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 373 PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANR 260
PQ K+ + + P+R P E E ++ R +S + G R
Sbjct: 180 PQRKDTHRAKSPRRQPKEHEVDKKRRSYSPANKDGDRR 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,038,325
Number of Sequences: 37544
Number of extensions: 401669
Number of successful extensions: 1417
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1416
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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