Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b06
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.1  
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac...    26   5.4  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -1

Query: 642 IKYVLKILSGHIIIFRYKEASRPFCGVVSSPFSLTLSP 529
           ++Y+  +  GH+  FRY ++   FC  ++       SP
Sbjct: 269 VEYLALVYPGHLFAFRYDKSLGKFCSFLNHNLLSLCSP 306


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
 Frame = +1

Query: 76   K*SLTTNQPIKIFKL-KISNNYSRISTTEGPLVFVIVRAVAIFTWRKSVWMQAFYTIYRA 252
            K SL T+  +  + L K+SNN+ R    + P      + V    W K + ++      +A
Sbjct: 824  KPSLDTSPELSKYSLAKLSNNFKRFVMRDDPFSQAYFKRVIGIRWEKDMNLKTAAKDMQA 883

Query: 253  SN*DIYVKKILKSPHLGNTCFRKRQPRYN 339
            +   + +K+         T F K  P+YN
Sbjct: 884  AKAFVRIKQ---------TEFLKNHPKYN 903


>SPAC823.07 |||GPI-phospholipase A2 activity regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 111 YFYWLVGCQRLFILLYSQISLRLHY 37
           YF  + G Q LF + +S ++  +HY
Sbjct: 97  YFIRVFGIQELFSVFFSMLNFMIHY 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,828
Number of Sequences: 5004
Number of extensions: 54243
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)