Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b06
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306...    29   4.2  
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778...    29   4.2  
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301...    29   4.2  
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063...    29   4.2  
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022...    27   9.8  

>05_05_0045 +
           21830291-21830343,21830446-21830541,21830620-21830694,
           21831329-21831403,21831497-21831719,21831813-21832056,
           21832621-21832769,21832913-21832944,21832991-21833078,
           21833157-21833438,21833542-21834243
          Length = 672

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 449 NLSTFLLPRALIPPLDEDMKRSLNLTWGDNVRE 547
           ++ TF +   ++  L EDMK  L+L  GDN RE
Sbjct: 504 DVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSRE 536


>04_04_1327 +
           32677408-32677460,32677563-32677658,32677737-32677811,
           32678446-32678520,32678615-32678837,32678931-32679174,
           32679740-32680197,32680276-32680470,32680660-32681361
          Length = 706

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 449 NLSTFLLPRALIPPLDEDMKRSLNLTWGDNVRE 547
           ++ TF +   ++  L EDMK  L+L  GDN RE
Sbjct: 538 DVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSRE 570


>04_03_0540 +
           16929782-16929834,16929937-16930032,16930111-16930185,
           16930819-16930893,16930987-16931209,16931303-16931546,
           16932111-16932568,16932647-16932928,16933032-16933733
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 449 NLSTFLLPRALIPPLDEDMKRSLNLTWGDNVRE 547
           ++ TF +   ++  L EDMK  L+L  GDN RE
Sbjct: 567 DVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSRE 599


>01_06_1350 +
           36505926-36505978,36506081-36506176,36506255-36506329,
           36506964-36507038,36507132-36507348,36507442-36507685,
           36508250-36508707,36508786-36509067,36509171-36509872
          Length = 733

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 449 NLSTFLLPRALIPPLDEDMKRSLNLTWGDNVRE 547
           ++ TF +   ++  L EDMK  L+L  GDN RE
Sbjct: 565 DVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSRE 597


>01_06_1149 -
           34901338-34901466,34901707-34901838,34901940-34902290,
           34902301-34902619,34902756-34902784,34903641-34903715,
           34903799-34903900,34904002-34904120,34904752-34904875,
           34904976-34905026,34905143-34905241,34905751-34905861
          Length = 546

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 209 VKAYGCRLFIRYIELQTETFM*RKSLKVLISAIPVF 316
           VKAYG +  I+ ++LQ      R +LK L++ IP F
Sbjct: 158 VKAYGLKATIQVVDLQVFASP-RITLKPLVATIPCF 192


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,243,828
Number of Sequences: 37544
Number of extensions: 324880
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)