Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b06
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20861-13|ABD63242.1|  112|Caenorhabditis elegans Hypothetical p...    63   2e-10
U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical p...    63   2e-10
Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical p...    30   1.6  
AY728064-1|AAU43725.1|  277|Caenorhabditis elegans cadmium-induc...    30   1.6  
U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical pr...    29   2.9  
DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.     29   2.9  
DQ407522-1|ABD85014.1|  854|Caenorhabditis elegans OGA-1b protein.     29   2.9  
DQ407521-1|ABD85013.1|  870|Caenorhabditis elegans OGA-1d protein.     29   2.9  
U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U20861-13|ABD63242.1|  112|Caenorhabditis elegans Hypothetical
           protein C28H8.11c protein.
          Length = 112

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = +2

Query: 326 NHVIMVQRMIXXXXXXXXXXXXXXXXRSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDM 505
           NHV++VQRM+                RST+SDRYKVFLDLFNLST+L+PR  IP L   M
Sbjct: 35  NHVLLVQRMLGAKQGTGGSSGYMYL-RSTVSDRYKVFLDLFNLSTWLIPREYIPMLSPRM 93

Query: 506 KRSLN 520
            ++L+
Sbjct: 94  VKTLS 98


>U20861-12|AAA62299.1|  403|Caenorhabditis elegans Hypothetical
           protein C28H8.11a protein.
          Length = 403

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = +2

Query: 326 NHVIMVQRMIXXXXXXXXXXXXXXXXRSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDM 505
           NHV++VQRM+                RST+SDRYKVFLDLFNLST+L+PR  IP L   M
Sbjct: 326 NHVLLVQRMLGAKQGTGGSSGYMYL-RSTVSDRYKVFLDLFNLSTWLIPREYIPMLSPRM 384

Query: 506 KRSLN 520
            ++L+
Sbjct: 385 VKTLS 389


>Z75543-11|CAA99876.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.11 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 404 RSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSL 517
           +S     Y +F DLFNL +FL+P  +IP +    KR +
Sbjct: 149 KSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFFKRKI 185


>AY728064-1|AAU43725.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-4 protein.
          Length = 277

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 404 RSTLSDRYKVFLDLFNLSTFLLPRALIPPLDEDMKRSL 517
           +S     Y +F DLFNL +FL+P  +IP +    KR +
Sbjct: 149 KSASDSLYNIFGDLFNLPSFLVP-VVIPVVRAFFKRKI 185


>U28742-3|AAA68333.3|  837|Caenorhabditis elegans Hypothetical
           protein T20B5.3 protein.
          Length = 837

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 300 EMRTFKDFLHINVSV*SSIYRIKSLHPYAFTPCKYCNS 187
           + + F  F H  V + ++I++  +   + F P +YC S
Sbjct: 142 DQKQFTSFAHAQVHIANTIFKYLNTKTFMFCPTEYCES 179


>DQ407523-1|ABD85015.1|  856|Caenorhabditis elegans OGA-1c protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 300 EMRTFKDFLHINVSV*SSIYRIKSLHPYAFTPCKYCNS 187
           + + F  F H  V + ++I++  +   + F P +YC S
Sbjct: 142 DQKQFTSFAHAQVHIANTIFKYLNTKTFMFCPTEYCES 179


>DQ407522-1|ABD85014.1|  854|Caenorhabditis elegans OGA-1b protein.
          Length = 854

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 300 EMRTFKDFLHINVSV*SSIYRIKSLHPYAFTPCKYCNS 187
           + + F  F H  V + ++I++  +   + F P +YC S
Sbjct: 142 DQKQFTSFAHAQVHIANTIFKYLNTKTFMFCPTEYCES 179


>DQ407521-1|ABD85013.1|  870|Caenorhabditis elegans OGA-1d protein.
          Length = 870

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -1

Query: 300 EMRTFKDFLHINVSV*SSIYRIKSLHPYAFTPCKYCNS 187
           + + F  F H  V + ++I++  +   + F P +YC S
Sbjct: 142 DQKQFTSFAHAQVHIANTIFKYLNTKTFMFCPTEYCES 179


>U23529-5|AAL32212.2|  385|Caenorhabditis elegans Hypothetical
           protein C15B12.8 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 222 PYAFTPCKYCNSSHNYKY*WSLSSRNSTIIV 130
           PY    CKY NS  ++     +SS NS I+V
Sbjct: 311 PYKVDQCKYTNSPDHHYLIGPVSSENSKILV 341


>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 336 ITWLSFSKTGIAEMRTFKDFLHINVSV*SSIYR--IKSLHPYAFTPCK 199
           + WL  S+T I  + T   F  +N     S+ R  I+S+ PY+F P K
Sbjct: 289 LKWLKLSRTNITTL-TPDHFYGLNALKTLSLSRMPIQSISPYSFVPLK 335


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -1

Query: 360 DPIILCTIITWLSFSKTGIAEMRTFKDF 277
           D  +L TI +++S SKTG+ E+  FK++
Sbjct: 167 DIALLLTISSFISHSKTGLEEIEGFKNW 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,299
Number of Sequences: 27780
Number of extensions: 307437
Number of successful extensions: 728
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)