Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b05
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/43 (20%), Positives = 22/43 (51%)
 Frame = -1

Query: 370  PQEKEILQNQLPKRNPTERETSEQGRDHSLRQQHGANRPQHRR 242
            PQ+++  Q Q   +  +++   +Q +    +QQ    +PQ ++
Sbjct: 1505 PQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQ 1547


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 432 STTDFAIFTSTAQKCKL*ITIHRKRRFCKTSSQNGTLRNAKRLNKAAI 289
           +T    +F S   + +L + IHR R      S NG+ R+ +  ++ ++
Sbjct: 287 TTKSSKMFGSRFDEERLTLRIHRGRGSVHNGSNNGSPRSPESNSRCSV 334


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 475 VFWTDTVIKICISIFDYRFRDF 410
           + WT T   IC+ +F +    F
Sbjct: 493 ICWTITTPAICVGVFTFNIIKF 514


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = -1

Query: 475 VFWTDTVIKICISIFDYRFRDF 410
           + WT T   IC+ +F +    F
Sbjct: 546 ICWTITTPAICVGVFTFNIIKF 567


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -2

Query: 354 FCKTSSQNGTLRNAKRLNKAAIILCASSTAPTAHNTV 244
           FC  S     L    RLNK A+ + A +    +  T+
Sbjct: 58  FCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPTI 94


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 449 DLYKYIRLQISRFSPAPPRNVSCRSPST 366
           D Y+  ++   + SPA P+   C   +T
Sbjct: 262 DAYEMHQISKKKLSPATPKGSKCSMITT 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,219
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)