Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte17b04
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   3.1  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   5.3  
SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces pom...    25   9.3  
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.3  

>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/68 (22%), Positives = 31/68 (45%)
 Frame = +1

Query: 58  VSLICYLLYLIHPYWILFLSIVMIYTMYTQFIVIN*HVFFFKSNVQNNNGFA*LQFVNTS 237
           + L+C LL  I P W  ++  V +  +   F++   ++ +    V    GF    F+ ++
Sbjct: 185 ILLVCVLLNFIPPKWFRYIFRVSVAVILLDFVL---NMIWLPIAVSTKYGFRDEAFMKST 241

Query: 238 HADSAVLN 261
           + D   +N
Sbjct: 242 NYDLGKVN 249


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = -1

Query: 384 YRKRPKSRKYLQKTSYFLNVTTFVIR---SKFN 295
           +RK+  S + + +  YFLN++TF I    SK+N
Sbjct: 90  FRKKNPSFEKVSELLYFLNISTFPIELVISKYN 122


>SPCP31B10.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 584 RSMLTFESVPTIVYTRCLPKRYELQVDI 501
           +++ T + +PT  Y  C+P +Y +Q DI
Sbjct: 55  KTITTTKGLPTNAYYNCVPSKY-IQSDI 81


>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -3

Query: 292 NQFLFVHVLACLVQ---HCLRAMYSRTATMQSHCYFEHLI*KKKHVNL 158
           N+F F+  +  L++   +C++ ++  +  + + CYF +    +  +NL
Sbjct: 135 NRFFFMSSINALIRISRNCIKLLFKNSLVLLAACYFMNTTPSRLVINL 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,683
Number of Sequences: 5004
Number of extensions: 60563
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)